Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2001
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    28   0.088
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    25   0.62 
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    25   0.62 
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      25   0.82 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.5  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      23   3.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.8  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 22/87 (25%), Positives = 42/87 (48%)
 Frame = -2

Query: 329 DEPEGLLVDRQLAQSIDQL*VSVRFDRKSWRC*VVIAKSVSDSYGDSVRCIRESNRP*SG 150
           + P+ +L   ++ Q I  L    R +++ W+  +  + S +D +   V+  R  ++P  G
Sbjct: 155 NSPQKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCF---VKVPRTPDKP--G 209

Query: 149 EGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           +G   + H    G  + NGCY+ R  R
Sbjct: 210 KGSFWSLHPDS-GNMFENGCYLRRQKR 235


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 246 LPIEANGDLELIDRLSKLPVDK 311
           L ++   + E+ +RLS LPVDK
Sbjct: 235 LGMQTTNEKEIFERLSALPVDK 256


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 246 LPIEANGDLELIDRLSKLPVDK 311
           L ++   + E+ +RLS LPVDK
Sbjct: 237 LGMQTTNEKEIFERLSALPVDK 258


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 246 LPIEANGDLELIDRLSKLPVDK 311
           L ++   + E+ +RLS LPVDK
Sbjct: 235 LGMQTTNEKEIFERLSVLPVDK 256


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
 Frame = +3

Query: 300 PVDKQPFWFINWQALEAHRKNP-------QTHVQRPNGFI 398
           P  + P WF+ W   +  R  P        T VQRP   +
Sbjct: 13  PPQEMPTWFVRWLNSQQPRNVPNFAAPSTSTAVQRPQAIL 52


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 246 LPIEANGDLELIDRLSKLPVDK 311
           L ++   + E+ +RLS LPVD+
Sbjct: 237 LGMQTTNEKEIFERLSILPVDE 258


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 388 TDS*IPSCPVKTLLPP----KQTQTQCRQYRAAGHRTPH 492
           T + IP+ P  +  PP    K+   Q + YR  G+ TPH
Sbjct: 220 TPTGIPT-PSTSASPPTVNIKKESPQMQSYRPTGNITPH 257


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 286 D*ASCLSTSNPSGSSTGK 339
           D   CLS   PSG   GK
Sbjct: 102 DDEKCLSLERPSGGGKGK 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,898
Number of Sequences: 336
Number of extensions: 3023
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)