Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2001
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    29   0.51 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.7  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.6  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    26   6.3  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.3  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 235 QRQDFRSKRTET*S*SID*ASCLSTSNPSGSSTGKP*KRTGRTHKLTCRGLTDS*IPS-C 411
           Q  DF SK+ +T S + D  S    + P  S+T    +   + HKLT  G+T   I   C
Sbjct: 179 QALDFYSKQLDTTSETKDSFSFCKETLPRSSTTSYSIRDADKHHKLTTSGVTKMNITERC 238

Query: 412 PVKTLL 429
             KT +
Sbjct: 239 KPKTTI 244


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 558 TNVKPTSTVANKPGAESMVTAEPYSLQWFVNHY 656
           T++K     A K GA+ ++T E   +QW  N Y
Sbjct: 151 TDIKDVVEHAAKLGAQRLITLEELPVQWHNNPY 183


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 412 PVKTLLPPKQTQTQCRQYRAAGHRTPHRPV 501
           P   +  PK+ Q  C  Y    +RTP  PV
Sbjct: 63  PPIAISDPKEAQNHCSSYYYIKYRTPDSPV 92


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 586 QTNPARKVWSRLNPTASNGS*II 654
           Q NP RK+W  + P  ++G  +I
Sbjct: 394 QLNPKRKIWEAIQPGFTSGEDLI 416


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 313 NPSGSSTGKP*KRTGRTHKLTCR 381
           NP+   T KP KR  +T  LTCR
Sbjct: 18  NPNVEPTPKPTKRRTKTGCLTCR 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,959
Number of Sequences: 5004
Number of extensions: 52030
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)