Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2001
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y14065-2|CAA74393.1|  497|Caenorhabditis elegans catalase 1 prot...    29   4.4  
X82175-1|CAA57665.1|  500|Caenorhabditis elegans catalase protein.     29   4.4  
U00064-6|AAB52703.1|  213|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL034488-15|CAA22451.1|  500|Caenorhabditis elegans Hypothetical...    29   4.4  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    28   7.8  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    28   7.8  
AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Y14065-2|CAA74393.1|  497|Caenorhabditis elegans catalase 1
           protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 264 GDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 401
           G+ +L+   + +   + P  F N+  +   ++NPQTH++ PN   D
Sbjct: 137 GNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180


>X82175-1|CAA57665.1|  500|Caenorhabditis elegans catalase protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 264 GDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 401
           G+ +L+   + +   + P  F N+  +   ++NPQTH++ PN   D
Sbjct: 137 GNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180


>U00064-6|AAB52703.1|  213|Caenorhabditis elegans Hypothetical
           protein ZC155.2 protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 174 PDTPNRITVAVGD-RFGDDDSTTPRLPI 254
           P+ PNR+T+  GD R   DD+ T R+ +
Sbjct: 15  PNVPNRVTIPDGDLRRNSDDTATDRISL 42


>AL034488-15|CAA22451.1|  500|Caenorhabditis elegans Hypothetical
           protein Y54G11A.5 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 264 GDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 401
           G+ +L+   + +   + P  F N+  +   ++NPQTH++ PN   D
Sbjct: 137 GNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +2

Query: 254 RSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA*RIHRSHHAQSKRCYR 433
           R ERRL   R   +    Q      QL  L    E    SR    R+ R H A SK C  
Sbjct: 295 RDERRLVAVR--RKIVADQENAQTDQLNMLIENWETKFESRENDSRVVREHTASSKLCRF 352

Query: 434 PSKLKRSVVSI 466
            +K +R++ +I
Sbjct: 353 FNKRQRTIAAI 363


>Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical
           protein F38A6.1c protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 203 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 194 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 236


>Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical
           protein F38A6.1b protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 203 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 225 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 267


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 203 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 289 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 331


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 358 RTHKLTCRGLTDS*IPSCPVKTL--LPPKQTQTQCRQYRAAGHRTPHRPVAR 507
           +T + T    + + +P    K +  LPPKQ  T+     +  H+TP  P+ +
Sbjct: 420 KTTERTSEAPSTNALPKAKPKKIRTLPPKQKHTKTSSTSSVSHQTPPSPIKK 471


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 203 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 69
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 289 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 331


>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 222 DDDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRK 359
           +D++   +L  ++ G L+L+D  S LP  K+    + W+  +   K
Sbjct: 316 EDEAVVAQLLRDSKGSLKLVDTSSLLPELKRETGVVQWKVFDRDMK 361


>AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical
           protein F55A3.3 protein.
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 268 SPFASIGSLGVVESSSPNLSPTATVIL 188
           SPFA +G  GV   S+  L PTA+ ++
Sbjct: 799 SPFAGLGFFGVPYRSATTLKPTASCLV 825


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,711
Number of Sequences: 27780
Number of extensions: 307361
Number of successful extensions: 779
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)