Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2000
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    29   0.59 
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    28   1.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    28   1.8  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   4.2  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   9.7  

>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -2

Query: 443 NGVTILSNEGAMEKKKK-----KFICLIISLRHRKK*TVIVNCSELII*CQTYSLYKYRK 279
           N +  L  E AM KKKK     +F+  + S  HR +   + NC   +I     S+Y Y +
Sbjct: 188 NDIITLEKEIAMFKKKKNWSDEQFLQYVWSDNHRDEMKTLYNCLYELIDRDKKSIYNYLR 247

Query: 278 RPLTRF 261
           R    F
Sbjct: 248 RKYNPF 253


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 551 LKRWSDQISEQTSGHLALHYTR 486
           L+RWS+++  QT  HL   Y+R
Sbjct: 15  LERWSERLKSQTISHLPTDYSR 36


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 594 GHWESRRKTS*RPEPQTLVRPDLRANQRPLSA 499
           G+W+ ++  S RP P      D+R+ Q+P SA
Sbjct: 584 GNWQLQQTHSSRPTPNASSPLDVRSKQKPSSA 615


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 534 VGPTFEAPASRTFSFYFPSDHQTFQVVYTSAGNVT-KVAHYALQTGGRQALSVLH 695
           +G  + +  + T SF  P+D  T +++Y +A N T   A  A   GG +A    H
Sbjct: 21  IGSMYASRDTSTSSFTNPTDSST-RLLYNNASNATFSSAALAAGVGGTRASGYTH 74


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 599 DVPSCLHLCGQRDQSSALCFADRWQT 676
           D P C +LC  +D+ S +   + W T
Sbjct: 218 DDPKCRYLCELQDEKSDMSVEEFWDT 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,226
Number of Sequences: 5004
Number of extensions: 67315
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)