Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2000
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.74 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    31   0.74 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    31   0.74 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    31   0.74 
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    30   2.3  
AL132952-1|CAB61134.2|  214|Caenorhabditis elegans Hypothetical ...    29   5.2  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 638 GHVARRGVDNLERLMVTGKVEG-KRPRGRSLKRWSDQISEQ 519
           GHVARR       LM   +  G KRP GR   RW+D + ++
Sbjct: 816 GHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKE 856


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 638  GHVARRGVDNLERLMVTGKVEG-KRPRGRSLKRWSDQISEQ 519
            GHVARR       LM   +  G KRP GR   RW+D + ++
Sbjct: 991  GHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKE 1031


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 638 GHVARRGVDNLERLMVTGKVEG-KRPRGRSLKRWSDQISEQ 519
           GHVARR       LM   +  G KRP GR   RW+D + ++
Sbjct: 730 GHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKE 770


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 638 GHVARRGVDNLERLMVTGKVEG-KRPRGRSLKRWSDQISEQ 519
           GHVARR       LM   +  G KRP GR   RW+D + ++
Sbjct: 342 GHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKE 382


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 638 GHVARRGVDNLERLMVTG-KVEGKRPRGRSLKRWSDQISEQTSGHLALHYTRELTGT 471
           GHVARR       LM      + KRP GR   RW+D + ++ +   A    ++L  T
Sbjct: 127 GHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWST 183


>AL132952-1|CAB61134.2|  214|Caenorhabditis elegans Hypothetical
           protein Y51H4A.1 protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 517 VCSEIWSDQRLRLRPLGRFPSTFPVTIRRSKLSTPL 624
           + SEI S+Q +    +   PS+FP+    S  S PL
Sbjct: 114 ISSEILSEQSIEFSSISPRPSSFPLDFATSSYSAPL 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,450,214
Number of Sequences: 27780
Number of extensions: 391951
Number of successful extensions: 823
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)