Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2000
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    28   0.12 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 750 KDSMDSPTHEHLGPTSA*NGERSTPVCHLSAKHNA 646
           + +  SP   H+G T   NG  STP+ + S K  A
Sbjct: 111 RSASPSPGMGHMGHTPTPNGHPSTPIVYASCKLQA 145


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 322 SSEQFTITVYFLRCLKEIIKHINFFFFFSIAP 417
           +++ F    Y +  LKE+ K INF +  +++P
Sbjct: 453 TTKTFCCKGYCMDLLKELSKTINFTYSLALSP 484


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 636 SRCPQRCRQLGTSDGHWE 583
           S C   C  LG + GH E
Sbjct: 33  SACAANCHSLGKAGGHCE 50


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 420 IAEDRDSVLACRLSAYIGSG 479
           + EDR+    C+ S  IGSG
Sbjct: 776 VKEDREGFYLCQASNGIGSG 795


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 420 IAEDRDSVLACRLSAYIGSG 479
           + EDR+    C+ S  IGSG
Sbjct: 772 VKEDREGFYLCQASNGIGSG 791


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,128
Number of Sequences: 438
Number of extensions: 4681
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)