Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1996
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...   270   6e-73
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.      29   4.9  
AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical ...    28   6.5  
AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical...    28   6.5  
AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8 prot...    28   6.5  
U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score =  270 bits (663), Expect = 6e-73
 Identities = 119/216 (55%), Positives = 147/216 (68%)
 Frame = +3

Query: 54  IRLILVFLTISHSYALNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLM 233
           +RL+L  L    ++ L+NGL  TPPMGW++W  F C  DC K+P  CI+E L K  AD +
Sbjct: 1   MRLLLPLLFCVGAFCLDNGLGRTPPMGWMSWTAFYCEIDCVKHPTGCINEQLYKDMADQL 60

Query: 234 VSEGYLDAGYEYLGIDDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYED 413
           VS GY   GY+ + IDDCW E  RD  G LV ++ RFP+GMKA+A Y+H +GLKFG+YED
Sbjct: 61  VSGGYDKVGYKSVHIDDCWSEMERDSHGILVANKTRFPSGMKALAKYMHDRGLKFGIYED 120

Query: 414 YGNLTCAGYPGVLGNEKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRS 593
           YG  TC GYPG   +EK+D  TF  W++DYLKLDGC ID   M  GYP F K LN TGR 
Sbjct: 121 YGTKTCGGYPGSYKHEKVDAQTFAAWDVDYLKLDGCNIDQAMMPIGYPLFEKELNETGRP 180

Query: 594 ILYSCSWPAYQEEKKILPNYASIAEHCNLWRNYDDI 701
           I+YSCSWPAY  +   L NY  I ++CN WRN+DDI
Sbjct: 181 IMYSCSWPAYLIDHPELVNYNLIGKYCNTWRNFDDI 216


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
            B0416.1 protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 294  EKTRDDKGRLVPDRKRFPNGMKAI 365
            E T D+KGRL+PDR   P+  + +
Sbjct: 1114 ETTDDEKGRLIPDRPPIPHSPREL 1137


>Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical
           protein F47H4.10 protein.
          Length = 145

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 486 EWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILYSCSWPAYQEEKKI 641
           EW++++LK+D   +  + +   Y D   L N T +SI  S    + +E + +
Sbjct: 84  EWDVEFLKVDKGTLFELVLAATYLDIKGLFNVTCKSIANSIKGKSPEEIRAV 135


>AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.
          Length = 144

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 486 EWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILYSCSWPAYQEEKKI 641
           EW++++LK+D   +  + +   Y D   L N T +SI  S    + +E + +
Sbjct: 83  EWDVEFLKVDKGTLFELVLAATYLDIKGLFNVTCKSIANSIKGKSPEEIRAV 134


>AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 371 LYPQQRFKVRHVRRLWKPHMCRLPRGAWKRKN 466
           L P+  +KV  + R   P+  +   G+W RKN
Sbjct: 158 LNPESNYKVEILLRRMVPYQIQYSNGSWSRKN 189


>AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 371 LYPQQRFKVRHVRRLWKPHMCRLPRGAWKRKN 466
           L P+  +KV  + R   P+  +   G+W RKN
Sbjct: 158 LNPESNYKVEILLRRMVPYQIQYSNGSWSRKN 189


>AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8
           protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 371 LYPQQRFKVRHVRRLWKPHMCRLPRGAWKRKN 466
           L P+  +KV  + R   P+  +   G+W RKN
Sbjct: 158 LNPESNYKVEILLRRMVPYQIQYSNGSWSRKN 189


>U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical
           protein K05F1.1 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 279 DDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMY 407
           D C +   RD+K +L P  +  PN ++  +  IH+  LK  MY
Sbjct: 335 DVCVIGWIRDEKNKLTPSAECLPNPLRP-STIIHANYLKDLMY 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,131,837
Number of Sequences: 27780
Number of extensions: 446185
Number of successful extensions: 1176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)