Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1996
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.2  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   5.5  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 288 WLEKTRDDKGRLVPDRKRFPNGMKAI 365
           W++  +DDKG   P + ++PN   ++
Sbjct: 151 WVDPVKDDKGN--PIKDKYPNNWLSV 174



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 522 YIDPIQMDKGYPDFGKLLNATGRSILYSCSWPAYQEEKK 638
           ++DP++ DKG P   K  N    S+     W  ++  K+
Sbjct: 151 WVDPVKDDKGNPIKDKYPN-NWLSVFNGTGWTFHEGRKQ 188


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 304 RVFSNQQSSIPKYSYPASRYPSLTIKSAVLFIRLSLMHSLGYFSQSVIH 158
           R+ SN     P+Y+       S T+K+ +  I LS + +  Y+S  + H
Sbjct: 228 RLTSNTFDYDPRYTKLTVAGESFTVKNGIYGIALSPVTNNLYYSPLLSH 276


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 707 SFYIIIIAPKVTVLCYRCIVWQYLFFLLI 621
           +FY+   + +   LC   ++ Q +FFLLI
Sbjct: 256 AFYLPADSGEKIALCINILLSQTMFFLLI 284


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 248 VSFTDHQICCPFY*ALAYAFVGIFLAVG 165
           +S  DH I  PF+  +  A   IF A+G
Sbjct: 1   MSDEDHPIYAPFFGVMGAASAIIFSALG 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,421
Number of Sequences: 438
Number of extensions: 5247
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)