Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1995
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    27   3.8  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    26   6.6  
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    26   6.6  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   8.8  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    25   8.8  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     25   8.8  

>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 360 VKDTKRDIKAKTKIILSVDPINYVHIQEAKTAKEVWHKLSSAFDDSGLTRRVGLL 196
           +K  K  IK   + + SV+P+    +      K+ + KLS+  D   +  R+G L
Sbjct: 87  LKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 291 VHIQEAKTAKEVWHKLSSAFDDSGLTRRVGLLRDL 187
           VH+ +A  A ++  KLSS  DD  L     L  DL
Sbjct: 228 VHLNDASVAAKLLMKLSSQNDDKSLLTAYQLAFDL 262


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 360 VKDTKRDIKAKTKIILSVDPINYVHIQEAKTAKEVWHKLSSAFDDSGLTRRVGLL 196
           +K  K  IK   K + SVD +    +      K+ + KLS+  D   +  R+G L
Sbjct: 87  LKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 337 NISFCIFYVIFFYTMSQLLVLQI 405
           +I+FC+FY +FF    + ++ +I
Sbjct: 105 DIAFCLFYALFFTFCREFIMQEI 127


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 324 KIILSVDPINYVHIQEAKTAKEVWHKLSSAFDDSGLTRRV 205
           +I L+  P  Y+        KEV  K   A DD GL +++
Sbjct: 93  RISLTFQPNEYLQDDNLTLVKEVRIKEEKAKDDEGLEKKI 132


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -2

Query: 453 LSGRDNFATWRFAMQTYLQHEEL*HCIEEDDVKDTKRDIKAKTKIILSVDPINYVHI-QE 277
           +S    F+     +Q  L  +   H IE +     + + K K KIIL++    +VH+   
Sbjct: 105 ISSIKKFSRIPVQLQPPLNKQNFPHNIEFETADFLRWESKRKFKIILALSVSKWVHLNNH 164

Query: 276 AKTAKEVWHKLSSAFDDSGL 217
            +   + + K+SS  + +G+
Sbjct: 165 DEGIIKFFGKISSLLETNGV 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,049
Number of Sequences: 5004
Number of extensions: 52371
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)