Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1995
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0973 - 26454553-26454792,26454990-26455084,26455217-26455514     44   1e-04
01_06_0505 - 29871692-29872198,29878940-29879359                       35   0.080
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330...    29   5.2  

>06_03_0973 - 26454553-26454792,26454990-26455084,26455217-26455514
          Length = 210

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
 Frame = -2

Query: 462 IEKLSGRDNFATWRFAMQTYLQHEEL*HCIEE------DDVKDTKRDIKAKTKIILSVDP 301
           +EK  G  NF  W+  ++  L  + +   ++E      D  K  +   +A   I LS+  
Sbjct: 11  VEKFDGTGNFVLWQMRLKNLLAQQGISKALQETMPEKMDSDKWNEMKAQAAATIRLSLSD 70

Query: 300 INYVHIQEAKTAKEVWHKLSSAFDDSGLTRRVGLLRDLCNV 178
                + + KT KE+W KL+S +    LT +  +L  LC++
Sbjct: 71  SVMYQVMDEKTPKEIWDKLASLYMSKSLTNKAIIL--LCSL 109


>01_06_0505 - 29871692-29872198,29878940-29879359
          Length = 308

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 438 NFATWRFAMQTYLQHEEL*HCIEEDD--VKDTKRDIKAKTKIILSVDPINYVHIQEAKTA 265
           N+ +W   +Q  ++ + +   IE       D +RD KA++ ++ S+     + + + ++A
Sbjct: 30  NYTSWCIRVQAMMEDQGVWDAIEPAAGVAVDPRRDKKARSHLLQSLPEDLLMQVAKKRSA 89

Query: 264 KEVWHKLSSAFDDSGLTRRVGL 199
           KEVW  L + F  +   R   L
Sbjct: 90  KEVWDCLKTRFVGADRVREARL 111


>07_03_0251 +
           15831712-15832127,15832203-15832344,15832692-15833056,
           15833134-15833293,15833699-15834036,15834138-15834315,
           15834454-15834987,15835176-15836291
          Length = 1082

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 351 TKRDIKAKTKIILSVDPINYVHIQEAKTAKEVWHKLSSAFDDSGLTRRV 205
           TK ++KA  ++  + D  +Y  +     +KE W K+  +F  + + +RV
Sbjct: 284 TKVEVKATLRLHNTDDSTHYSPVGSLLASKEKWEKMEGSFCLTNMPKRV 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,769,675
Number of Sequences: 37544
Number of extensions: 285968
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)