Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1995
         (754 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2476|AAF55520.1|   89|Drosophila melanogaster CG18598-P...    44   2e-04
BT011524-1|AAS15660.1|   89|Drosophila melanogaster RH42419p pro...    42   7e-04
X07656-1|CAA30502.1|  273|Drosophila melanogaster protein ( Dros...    38   0.011
BT029721-1|ABL75778.1|   88|Drosophila melanogaster IP17567p pro...    31   1.3  
AE014298-2945|AAF49028.2| 2067|Drosophila melanogaster CG11943-P...    30   2.9  
AE014298-2944|AAN09521.1| 2090|Drosophila melanogaster CG11943-P...    30   2.9  
BT029660-1|ABL75718.1|   52|Drosophila melanogaster IP17267p pro...    29   9.0  

>AE014297-2476|AAF55520.1|   89|Drosophila melanogaster CG18598-PA
           protein.
          Length = 89

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
 Frame = -2

Query: 462 IEKLSGRDNFATWRFAMQTYLQHEEL*HCIE---EDDVKDTKRDIKAKTKIILSVDPINY 292
           IEKL G DN+  W   ++ YL+ EEL   +E   E++ +   +D +AK  I+  ++    
Sbjct: 7   IEKLKGLDNYKAWSMTVRAYLESEELWTVVENGPENNEESLLKDKRAKFLILCLIETKLC 66

Query: 291 VHIQEAKTAKEVWHKL 244
             +   +TA+++W+ L
Sbjct: 67  QFMVSIRTARDLWNYL 82


>BT011524-1|AAS15660.1|   89|Drosophila melanogaster RH42419p
           protein.
          Length = 89

 Score = 42.3 bits (95), Expect = 7e-04
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
 Frame = -2

Query: 462 IEKLSGRDNFATWRFAMQTYLQHEEL*HCIE---EDDVKDTKRDIKAKTKIILSVDPINY 292
           IEKL G DN+  W   ++ YL+ EEL   +E   E++ +   +D +AK  I+   +    
Sbjct: 7   IEKLKGLDNYKAWSMTVRAYLESEELWTVVENGPENNEESLLKDKRAKFLILCLFETKLC 66

Query: 291 VHIQEAKTAKEVWHKL 244
             +   +TA+++W+ L
Sbjct: 67  QFMVSIRTARDLWNYL 82


>X07656-1|CAA30502.1|  273|Drosophila melanogaster protein (
           Drosophila melanogasterretrotransposon 1731 sequence. ).
          Length = 273

 Score = 38.3 bits (85), Expect = 0.011
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
 Frame = -2

Query: 462 IEKLSGRDNFATWRFAMQTYLQHEEL*HCIEEDDVK---DT-----KRDIKAKTKIILSV 307
           I+KL    ++ TW   M++ L H  L   +  + VK   DT      +D KA   IILSV
Sbjct: 7   IDKLED-GSYETWSIQMRSVLVHACLWKVVSGESVKPEVDTGGAWQSQDEKALATIILSV 65

Query: 306 DPINYVHIQEAKTAKEVWHKLSSAFDDSGLTRRVGLLRDLCNVKIL 169
                 +++   TA E W  L       G  R V L + L + ++L
Sbjct: 66  KSSQLGYVKGCLTAAEAWKVLQDVHQPKGPLRTVMLYKKLLSKRLL 111


>BT029721-1|ABL75778.1|   88|Drosophila melanogaster IP17567p
           protein.
          Length = 88

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 462 IEKLSGRDNFATWRFAMQTYLQHEEL*HCIEEDDVKDTK 346
           I KL GR+N+  WR  ++T+L+  +L    E  +  +TK
Sbjct: 14  IPKLHGRENYWQWRILLKTFLEANDLWKHNEPKESPETK 52


>AE014298-2945|AAF49028.2| 2067|Drosophila melanogaster CG11943-PA,
            isoform A protein.
          Length = 2067

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 464  NAI*LFIVIENLIRWILVKKKTNCPLLIERLCSLQNCLSL 583
            N+  L  +++NL++WI++ +  +  L I    SL NCL +
Sbjct: 1473 NSSNLRFILKNLVQWIMISEVKSQKLRINLYSSLLNCLRI 1512


>AE014298-2944|AAN09521.1| 2090|Drosophila melanogaster CG11943-PB,
            isoform B protein.
          Length = 2090

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 464  NAI*LFIVIENLIRWILVKKKTNCPLLIERLCSLQNCLSL 583
            N+  L  +++NL++WI++ +  +  L I    SL NCL +
Sbjct: 1496 NSSNLRFILKNLVQWIMISEVKSQKLRINLYSSLLNCLRI 1535


>BT029660-1|ABL75718.1|   52|Drosophila melanogaster IP17267p
           protein.
          Length = 52

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 462 IEKLSGRDNFATWRFAMQTYLQ 397
           I KL GR+N+  WR  ++T+L+
Sbjct: 13  IPKLHGRENYWQWRILLKTFLE 34


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,921,996
Number of Sequences: 53049
Number of extensions: 515243
Number of successful extensions: 958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)