Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1994
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   5.3  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   5.3  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   7.1  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.1  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.1  

>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 115 SGRSSLEPTPSIDGSISHDSTHIAYRGLSRDMV 213
           SG SS  P P I   +  D   +A + LSR ++
Sbjct: 43  SGSSSTSPLPQISCLLRKDDVPLANKELSRSLI 75


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 1   AETYGHRLVYSEKDIFSNDVMLEYATEECYLTWPRSPD 114
           A+ Y H L ++EK++  N+ M          + P +PD
Sbjct: 440 AKNYSHGLAWTEKEVLKNNEMPSKWINPLETSLPYAPD 477


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 130 LEPTP--SIDGSISHDSTHIAYRGLSRDMVLEDSAEDNDL 243
           L+P P  + +GS++H   ++ Y+      V+ + A  N+L
Sbjct: 744 LDPIPLENRNGSLTHSVEYVLYKKSKGSQVITEKARSNEL 783


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 10  YGHRLVYSEKDIFSNDVMLEYATEECYLTWPRSPDS 117
           YG     S      N +++ Y    CY + P SPD+
Sbjct: 21  YGANASNSSVPTPDNTLVVSYTNTSCYTSGPLSPDT 56


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 139 TPSIDGSIS-HDSTHIAYRGLSRDMVLEDSAEDNDLLE 249
           TP+ +  I  +D  H    G+SR    E+SAE ++++E
Sbjct: 401 TPTEEEQIEGYDQEHTDELGMSRANTTEESAETHEVIE 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,420
Number of Sequences: 5004
Number of extensions: 47889
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)