Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1994
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768...    27   9.7  
09_04_0377 + 17086775-17088310                                         27   9.7  
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674...    27   9.7  
02_01_0442 + 3196592-3196661,3198663-3198739,3199185-3199273,320...    27   9.7  
01_06_0137 + 26855468-26856358                                         27   9.7  

>12_01_0830 -
           7678038-7678444,7678996-7680943,7681231-7681983,
           7682701-7682824,7683590-7683723
          Length = 1121

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 411 RELPVSS*RRKVTT*PVKCFV----QIVHPPSFSRVSGQPTSPQDSSA-GCSPSP 262
           R+ P S  R  +++ P   FV     +VH P+FS +S   TS   SS  G + SP
Sbjct: 340 RKAPQSMFRPLLSSVPTTTFVAGKGNVVHRPTFSHISSVTTSSNASSEHGATFSP 394


>09_04_0377 + 17086775-17088310
          Length = 511

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 345 IVHPPSFSRVSGQPTSPQDSSAGCSPSP 262
           +VH P  SRVS  P+  +  S   SPSP
Sbjct: 11  VVHLPGRSRVSASPSPRRRRSPSRSPSP 38


>02_02_0097 -
           6746934-6747005,6747372-6748325,6748421-6748435,
           6748592-6748984
          Length = 477

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 13  GHRLVYSEKDIFSNDVMLEYATEECYLTWPRSPDSGRSSLEPTPSIDGSIS 165
           G  L  S + +FS D   +   EE     P  P S  SSL  +P+ DG+ S
Sbjct: 166 GGSLQASVEQVFSEDFFQQSLLEELLQLPPTRPSSSSSSLVGSPA-DGAAS 215


>02_01_0442 +
           3196592-3196661,3198663-3198739,3199185-3199273,
           3200101-3200220,3200970-3201086,3201290-3201433,
           3201537-3201660,3201772-3201963,3202542-3202907
          Length = 432

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 154 HRSRASAPN*TFPNREIW 101
           H++RA  P  TFPN ++W
Sbjct: 403 HQTRAGLPEPTFPNYDLW 420


>01_06_0137 + 26855468-26856358
          Length = 296

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 165 ADASIDRGRRLQTRPSRIGRSGP 97
           A A +D  RRLQTRP R G   P
Sbjct: 46  AVAWVDAARRLQTRPDRAGGVDP 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,359
Number of Sequences: 37544
Number of extensions: 330381
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)