Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1994
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    50   1e-06
U15418-1|AAA67360.1|   71|Caenorhabditis elegans LIN-32 protein.       50   1e-06
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    47   1e-05
AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin p...    43   2e-04
U41554-2|AAA83297.2|  111|Caenorhabditis elegans Helix loop heli...    39   0.003
Z47356-3|CAA87416.1|  268|Caenorhabditis elegans Hypothetical pr...    39   0.003
U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    39   0.003
Z69787-9|CAA93634.1|  226|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z66514-3|CAA91343.1|  854|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AY342006-1|AAQ22724.1|  854|Caenorhabditis elegans TRP-3 channel...    27   8.6  
AJ276029-1|CAC81656.1|  854|Caenorhabditis elegans TRP homologou...    27   8.6  

>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +1

Query: 337 MHNLNKAFDRLRGHLPSLGADRQLSKYETLQMAQTYIAALYELLQ 471
           M+ LN A+D LR  LP + + ++LSK+ETLQMAQ YI  L ++L+
Sbjct: 85  MNTLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECLSQILK 129


>U15418-1|AAA67360.1|   71|Caenorhabditis elegans LIN-32 protein.
          Length = 71

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +1

Query: 337 MHNLNKAFDRLRGHLPSLGADRQLSKYETLQMAQTYIAALYELLQ 471
           M+ LN A+D LR  LP + + ++LSK+ETLQMAQ YI  L ++L+
Sbjct: 14  MNTLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECLSQILK 58


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +1

Query: 337 MHNLNKAFDRLRGHLPSLGADRQLSKYETLQMAQTYIAALYELLQ 471
           MH LN A D LR ++P     ++LSK ETL++A+ YI AL  +LQ
Sbjct: 32  MHGLNNALDMLREYIPITTQHQKLSKIETLRLARNYIDALQRMLQ 76


>AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin
           protein 1 protein.
          Length = 184

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +1

Query: 337 MHNLNKAFDRLRGHLPSLGADRQLSKYETLQMAQTYIAAL 456
           M++LN A + LRG LP+L  + +++K ETL+ AQ YIA+L
Sbjct: 75  MNSLNDALEHLRGILPALPDEPKMTKIETLRKAQEYIASL 114


>U41554-2|AAA83297.2|  111|Caenorhabditis elegans Helix loop helix
           protein 19 protein.
          Length = 111

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +1

Query: 343 NLNKAFDRLRGHLPSLGADRQLSKYETLQMAQTYIAALYELLQ 471
           ++  AF+ LR HLP    DR+ SK ETL+ A  YI+ L  +L+
Sbjct: 16  SIGNAFNMLRNHLPKQLRDRKPSKAETLKSAAQYISHLLRILE 58


>Z47356-3|CAA87416.1|  268|Caenorhabditis elegans Hypothetical
           protein T15H9.3 protein.
          Length = 268

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +1

Query: 337 MHNLNKAFDRLRGHLPSLGADRQLSKYETLQMAQTYIAALYELLQ 471
           + N+N  ++RLR HLP    ++++SK +TL++A  YI  L  LL+
Sbjct: 186 VRNVNDGYERLRKHLPVHFDEKRISKVDTLRLAIRYIKHLDNLLR 230


>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +1

Query: 337 MHNLNKAFDRLRGHLPSLGADRQLSKYETLQMAQTYIAALYELLQ 471
           + + N AF +LR  LP+L  +++LSK E L+ +  YI+ L  LLQ
Sbjct: 45  VESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISFLDNLLQ 89


>Z69787-9|CAA93634.1|  226|Caenorhabditis elegans Hypothetical
           protein C44C10.8 protein.
          Length = 226

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +1

Query: 346 LNKAFDRLRGHLPSLGAD--RQLSKYETLQMAQTYIAALYELL 468
           +N AF+ L+ H+P L ++  + L K +TL++A  YI  L +LL
Sbjct: 39  INSAFEILQQHIPYLKSEERKSLPKIKTLRLAMQYIDHLKKLL 81


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 337 MHNLNKAFDRLRGHL--PSLGADRQLSKYETLQMAQTYIAALY 459
           +HNLN AFD    HL  P +     +S++   +   TY++  Y
Sbjct: 208 IHNLNLAFDIAEKHLDIPKMLDAEDVSRHPDEKSTMTYVSCFY 250


>Z66514-3|CAA91343.1|  854|Caenorhabditis elegans Hypothetical
           protein K01A11.4 protein.
          Length = 854

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 614 SQNKRITCNTHSETYIFIVYKSD 546
           SQ ++ TC+T+S+T I  V++SD
Sbjct: 293 SQMRQFTCSTNSQTTIKSVFRSD 315


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 106 SPDSGRSSLEPTPSIDGSISHDSTHIAYRGLSRDMVLEDS 225
           SP + R S+    S + S+SH + H  YRG+S+   +E S
Sbjct: 102 SPAAARVSV----STNDSLSHSTPHNTYRGISKYSTIERS 137


>AY342006-1|AAQ22724.1|  854|Caenorhabditis elegans TRP-3 channel
           protein protein.
          Length = 854

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 614 SQNKRITCNTHSETYIFIVYKSD 546
           SQ ++ TC+T+S+T I  V++SD
Sbjct: 293 SQMRQFTCSTNSQTTIKSVFRSD 315


>AJ276029-1|CAC81656.1|  854|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 854

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 614 SQNKRITCNTHSETYIFIVYKSD 546
           SQ ++ TC+T+S+T I  V++SD
Sbjct: 293 SQMRQFTCSTNSQTTIKSVFRSD 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,201
Number of Sequences: 27780
Number of extensions: 274771
Number of successful extensions: 600
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)