Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1994
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.7  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 143 GVGSKLDLPESGDLGHVR*HSSVAYS 66
           G+ ++++LP+   LGH + HS++  S
Sbjct: 178 GISNEVELPQFRVLGHRQRHSTIHLS 203


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 634 FFSIFNLVKISVL 596
           F  IFNLVKIS L
Sbjct: 299 FSGIFNLVKISPL 311


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 167 WLMLPSIEGVGSKLDLPESGDLGH 96
           W   P+  GV +++ LP+   LGH
Sbjct: 170 WNEGPNSVGVSNEVSLPQFKVLGH 193


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 167 WLMLPSIEGVGSKLDLPESGDLGH 96
           W   P+  GV +++ LP+   LGH
Sbjct: 109 WNEGPNSVGVSNEVSLPQFKVLGH 132


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 634 FFSIFNLVKISVL 596
           F  IFNLVKIS L
Sbjct: 49  FSGIFNLVKISPL 61


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 423 PANGSDVHSRPLRAPAVSEVL 485
           P N   + SRPL  PA S  L
Sbjct: 83  PGNLEQIGSRPLHPPASSTSL 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,625
Number of Sequences: 438
Number of extensions: 3324
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)