Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1993
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical...    28   3.1  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    27   7.1  

>Z69788-1|CAA93646.1|  894|Caenorhabditis elegans Hypothetical
           protein F09A5.2 protein.
          Length = 894

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = -2

Query: 304 IYNFGGTNFLVSDAVS*HPGILLYIFTKSIRETITRTGY*IAHPAGFHTVYCGGQTIGGA 125
           IYNF  +  L+S + +  PG  +Y F   I   + + G  I   AG   ++     I   
Sbjct: 205 IYNFNYSKTLISTSYANTPGFAMYTFLLKIMNCVNKNG--IKLDAGILNIFTDMTYIDLC 262

Query: 124 LTPRFNASKPVTLKVL*E 71
            +  F +S P TL  L E
Sbjct: 263 ESDVFMSSFPDTLNKLIE 280


>Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 283 WYLQSCKFWEARYQRRARSFVDPGHQL 363
           W  ++ +FW+ +YQ R R  VD   +L
Sbjct: 359 WSTRTHEFWKPKYQPRVRKIVDENMKL 385


>AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 283 WYLQSCKFWEARYQRRARSFVDPGHQL 363
           W  ++ +FW+ +YQ R R  VD   +L
Sbjct: 359 WSTRTHEFWKPKYQPRVRKIVDENMKL 385


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 172 AGFHTVYCGGQTIGGALTPRFNASKPV 92
           AGF+ +Y G Q +GGA   +F  S  V
Sbjct: 19  AGFYYLYVGVQEVGGANRRKFATSSEV 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,398,519
Number of Sequences: 27780
Number of extensions: 190043
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)