Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1990
         (423 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   0.92 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 298 ARSVRVAHDAAAA*GSTFASKRIAPGGDH 384
           A +VR A DAAAA G+  A     P  DH
Sbjct: 278 APAVRAAGDAAAARGAARADGAGGPLHDH 306


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 356 LAKVLPHAAAASCATRTD 303
           L +VLP A   SCA  TD
Sbjct: 62  LKRVLPDALKTSCAKCTD 79


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 302 DLYASHMMRRLREEAPSPANGSLL 373
           D++ +HM  R  ++ P+P  G L+
Sbjct: 650 DVHQTHMRIRPPKKIPTPYGGRLV 673


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 302 DLYASHMMRRLREEAPSPANGSLL 373
           D++ +HM  R  ++ P+P  G L+
Sbjct: 650 DVHQTHMRIRPPKKIPTPYGGRLV 673


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 302 DLYASHMMRRLREEAPSPANGSLL 373
           D++ +HM  R  ++ P+P  G L+
Sbjct: 650 DVHQTHMRIRPPKKIPTPYGGRLV 673


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 302 DLYASHMMRRLREEAPSPANGSLL 373
           D++ +HM  R  ++ P+P  G L+
Sbjct: 650 DVHQTHMRIRPPKKIPTPYGGRLV 673


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,529
Number of Sequences: 336
Number of extensions: 1673
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)