Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1990
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    27   1.2  
SPBC713.10 |tim16||TIM23 translocase complex subunit Tim16|Schiz...    27   1.6  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   2.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   2.8  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   6.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   8.5  

>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -2

Query: 374 PGAIRLLAKVLPHAAAASCATRTDLASVEERSRD*PRTGSPPGTLES 234
           PG  R+ + V+P AAAA+ A  +   S +E S     TG+P    ES
Sbjct: 174 PGPYRV-SVVVPAAAAAAAAAASSDMSSDEASSQAETTGTPKKMPES 219


>SPBC713.10 |tim16||TIM23 translocase complex subunit
           Tim16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 128

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 20  AVQRGEMSVHRAGSYYGVPHSTLE 91
           AV+RGEM++  AGS   +   +LE
Sbjct: 49  AVRRGEMTIQEAGSILNIKPESLE 72


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 224 NGPETPTYPAGYPFWASPGFAPPP 295
           N P+      G PFW+ P  AP P
Sbjct: 688 NFPKDSVTSTGQPFWSGPKRAPTP 711


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 230 PETPTYPAGYPFWASPGFAPPPT 298
           P+   +    PF A+P FAP PT
Sbjct: 187 PQATGFMQTQPFGAAPSFAPQPT 209


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 384  MIPSRSDPFAGEGASSRSRRIMCDAYRSGVGGGAKPG 274
            +IPSR +PF         + ++C   R+G G G  PG
Sbjct: 1547 LIPSRDEPFGLVAVEFGRKGVLCIGSRTG-GLGHMPG 1582


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 209 FSNGLNGPETPTYPAGYPF-WASPG 280
           +  GL  PE    P GY F W+S G
Sbjct: 153 YCGGLPAPEDSNNPLGYKFSWSSRG 177


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 384 MIPSRSDPFAGEGASSRSRRIMCDAYRSGVGGGAKPG 274
           +IPSR +PF         R  +C   R G G G  PG
Sbjct: 630 LIPSRDEPFGLVAVEFGRRGAICIGSRVG-GLGEMPG 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,963
Number of Sequences: 5004
Number of extensions: 24514
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)