Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1990
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68010-2|CAA92010.2| 433|Caenorhabditis elegans Hypothetical pr... 71 5e-13
AB236333-1|BAE45265.1| 433|Caenorhabditis elegans MBlk-1 Relate... 71 5e-13
AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical... 30 0.79
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 1.0
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ... 29 1.0
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 28 2.4
AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical ... 28 2.4
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 28 3.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 3.2
AL023828-19|CAA19464.2| 293|Caenorhabditis elegans Hypothetical... 27 4.2
AC199171-2|ABO33268.1| 297|Caenorhabditis elegans Hypothetical ... 27 4.2
Z47075-1|CAA87382.2| 308|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z93379-10|CAB07594.1| 508|Caenorhabditis elegans Hypothetical p... 27 7.3
Z92830-17|CAB07364.1| 508|Caenorhabditis elegans Hypothetical p... 27 7.3
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 27 7.3
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 27 7.3
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 27 7.3
AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical ... 27 7.3
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z49132-2|CAA88982.1| 64|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 26 9.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 26 9.7
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 26 9.7
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 26 9.7
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 26 9.7
>Z68010-2|CAA92010.2| 433|Caenorhabditis elegans Hypothetical
protein T01C1.2 protein.
Length = 433
Score = 70.5 bits (165), Expect = 5e-13
Identities = 31/39 (79%), Positives = 38/39 (97%)
Frame = +2
Query: 2 LVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLM 118
L EAV++V+RGEM+VHRAGS++GVPHSTLEYKVKER+LM
Sbjct: 348 LDEAVRSVRRGEMTVHRAGSFFGVPHSTLEYKVKERNLM 386
Score = 34.3 bits (75), Expect = 0.036
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 2 LVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKV 100
L +AV+ +++G++ RA YG+P STL K+
Sbjct: 159 LTQAVEDIRQGKLGTRRASVVYGIPRSTLRNKI 191
>AB236333-1|BAE45265.1| 433|Caenorhabditis elegans MBlk-1 Related
factor-1 protein.
Length = 433
Score = 70.5 bits (165), Expect = 5e-13
Identities = 31/39 (79%), Positives = 38/39 (97%)
Frame = +2
Query: 2 LVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLM 118
L EAV++V+RGEM+VHRAGS++GVPHSTLEYKVKER+LM
Sbjct: 348 LDEAVRSVRRGEMTVHRAGSFFGVPHSTLEYKVKERNLM 386
Score = 34.3 bits (75), Expect = 0.036
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 2 LVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKV 100
L +AV+ +++G++ RA YG+P STL K+
Sbjct: 159 LTQAVEDIRQGKLGTRRASVVYGIPRSTLRNKI 191
>AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical
protein Y47D7A.11 protein.
Length = 129
Score = 29.9 bits (64), Expect = 0.79
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 230 PETPTYPAGYPFWASPGFA--PPPTPDLYAS 316
P PTYP+ + P ++ PPP P +Y+S
Sbjct: 46 PVAPTYPSPPAYAQKPSYSAPPPPAPSVYSS 76
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 384 MIPSRSDP-FAGEGASSRSRRIMCDAYRSGVGGGAKPGLAQNG*PAGYVGVSGP 226
M+ + + P F + + R RR A SG GGG + +G PAG G GP
Sbjct: 58 MVQTGNSPGFRFDQITGRVRRQYATAAVSGGGGGCQCAAQASGCPAGPPGPPGP 111
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 384 MIPSRSDP-FAGEGASSRSRRIMCDAYRSGVGGGAKPGLAQNG*PAGYVGVSGP 226
M+ + + P F + + R RR A SG GGG + +G PAG G GP
Sbjct: 58 MVQTGNSPGFRFDQITGRVRRQYATAAVSGGGGGCQCAAQASGCPAGPPGPPGP 111
>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
protein Y67D8A.1 protein.
Length = 1020
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 337 TQPPHHVRRVQIWRRWR 287
TQ PH V VQIW WR
Sbjct: 279 TQTPHEVEPVQIWPSWR 295
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 218 GLNGPETPTYPAGYPFWASPGFAPPPTP 301
G GP+ P + YP A+PG A PP P
Sbjct: 205 GTPGPDGPAGESTYPEPAAPGPAGPPGP 232
>AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical
protein B0205.10 protein.
Length = 455
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 230 PETPTYPAGYPFWASPGFAPPPTPDLYASHMMRRLREEAPSP 355
P P P +P AP PTPD A+ ++ + AP+P
Sbjct: 84 PGPAPVPVPEPAQLAPQSAPEPTPDAPAAAPVQETPQVAPAP 125
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 218 GLNGPETPTYPAGYPFWASPGFAPPPTP 301
G GP+ P + YP A PG A PP P
Sbjct: 206 GTPGPDGPAGESTYPEPAGPGPAGPPGP 233
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Frame = +2
Query: 218 GLNGPETPTYPAGYPFW-------ASPGFAPPPTP 301
G+ GP TP YPA P A PG PP TP
Sbjct: 274 GMPGPMTPGYPAQAPAAPRTTPGSAGPGTGPPGTP 308
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Frame = +2
Query: 218 GLNGPETPTYPAGYPFW-------ASPGFAPPPTP 301
G+ GP TP YPA P A PG PP TP
Sbjct: 272 GMPGPMTPGYPAQAPAAPRTTPGSAGPGTGPPGTP 306
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 239 PTYPAGYPFWASPGFAPPPTPDLYASH 319
P PA YP A P APPP P Y H
Sbjct: 51 PPPPAPYPQQAVPAPAPPPAP--YPQH 75
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 215 NGLNGPETPTYPAGYPFWASPGFAPPPTPDLYASH 319
N + P P PA YP A P APPP P Y H
Sbjct: 90 NAVPVPAPP--PAPYPQHAVPAPAPPPAP--YPQH 120
>AL023828-19|CAA19464.2| 293|Caenorhabditis elegans Hypothetical
protein Y17G7B.17 protein.
Length = 293
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1
Query: 375 SRSDPFAGEGASSRSRRI 322
SR PF G GASS SRR+
Sbjct: 217 SRRSPFGGAGASSSSRRM 234
>AC199171-2|ABO33268.1| 297|Caenorhabditis elegans Hypothetical
protein VY35H6BL.1 protein.
Length = 297
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +2
Query: 242 TYPAGYPFWASPGFAPPPTPDL---YASHMMRR 331
T+P G FWA G APPP L Y H+ +R
Sbjct: 244 TFPVG--FWAFFGNAPPPIGTLRHQYPQHIQKR 274
>Z47075-1|CAA87382.2| 308|Caenorhabditis elegans Hypothetical
protein E02H1.1 protein.
Length = 308
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 281 FAPPPTPDLYASHMMRRLREEAPSPANGSLLEGIIRTSLQRSGAVLM 421
F PPP D S ++R + P P N EG++R R LM
Sbjct: 190 FRPPPKVD---SAVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTLM 233
>Z93379-10|CAB07594.1| 508|Caenorhabditis elegans Hypothetical
protein F21H7.2 protein.
Length = 508
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 245 YPAGYPFWASPGFAPPP 295
+P G PFW S PPP
Sbjct: 359 FPGGRPFWMSNNGKPPP 375
>Z92830-17|CAB07364.1| 508|Caenorhabditis elegans Hypothetical
protein F21H7.2 protein.
Length = 508
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 245 YPAGYPFWASPGFAPPP 295
+P G PFW S PPP
Sbjct: 359 FPGGRPFWMSNNGKPPP 375
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -1
Query: 324 IMCDAYRSGVGGGAKPGLAQNG*PAGYVGVSGPLSP 217
I CD Y SG GGG G G AGY G +G +P
Sbjct: 5 ISCD-YASGGGGGGGGGGGGGG-EAGYSGGAGVEAP 38
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -3
Query: 391 CPDDPLQE--RSVCWR--RCFLTQPPHHVRRVQIWRRWR 287
C D PL E + W RC +P H + ++ W RW+
Sbjct: 343 CIDPPLTEVPKEETWSCPRCETVKPEHKIEKILCW-RWK 380
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -3
Query: 391 CPDDPLQE--RSVCWR--RCFLTQPPHHVRRVQIWRRWR 287
C D PL E + W RC +P H + ++ W RW+
Sbjct: 343 CIDPPLTEVPKEETWSCPRCETVKPEHKIEKILCW-RWK 380
>AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical
protein T26C12.3 protein.
Length = 393
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 212 SNGLNGPETPTYPAGYPFWASPGFAPPPTPDLYASHMMRRLR 337
SNG+ TP P ++P PP P+L H++R +R
Sbjct: 169 SNGIVMYRTPRCPV----CSAPPSRSPPVPNLALDHLLRNMR 206
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 230 PETPTYPAGYPFWASPGFAPPPTPDLYAS 316
P PT+ A P A P P P P YAS
Sbjct: 470 PAPPTFLAPTPVIAPPPPEPTPAPSHYAS 498
>Z49132-2|CAA88982.1| 64|Caenorhabditis elegans Hypothetical
protein ZK666.2 protein.
Length = 64
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 239 PTYPAGYPF-WASPGFAPPPTPDLYASH 319
P Y + Y + +ASP + P P +YA H
Sbjct: 19 PMYGSPYGYGYASPAYVQPVGPPVYAGH 46
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 209 FSNGLNGPETPTYPAGYPFWASPGFAPPPTP 301
+ G+ P P YP+ A PG PPP P
Sbjct: 343 YPGGMPPPPPPRYPS-----AGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 209 FSNGLNGPETPTYPAGYPFWASPGFAPPPTP 301
+ G+ P P YP+ A PG PPP P
Sbjct: 353 YPGGMPPPPPPRYPS-----AGPGMYPPPPP 378
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 209 FSNGLNGPETPTYPAGYPFWASPGFAPPPTPDLYASHMMRRLREEAPSPANGSLL 373
F+ G +G PT +G P A P Y + + E AP+ NG+++
Sbjct: 11347 FAIGPDGKPIPTDTSGKPLSADGSPLPTDNNGNYILVLSEGVTEHAPTDENGNVI 11401
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 209 FSNGLNGPETPTYPAGYPFWASPGFAPPPTPDLYASHMMRRLREEAPSPANGSLL 373
F+ G +G PT +G P A P Y + + E AP+ NG+++
Sbjct: 11392 FAIGPDGKPIPTDTSGKPLSADGSPLPTDNNGNYILVLSEGVTEHAPTDENGNVI 11446
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 209 FSNGLNGPETPTYPAGYPFWASPGFAPPPTPDLYASHMMRRLREEAPSPANGSLL 373
F+ G +G PT +G P A P Y + + E AP+ NG+++
Sbjct: 11392 FAIGPDGKPIPTDTSGKPLSADGSPLPTDNNGNYILVLSEGVTEHAPTDENGNVI 11446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,850,660
Number of Sequences: 27780
Number of extensions: 163193
Number of successful extensions: 725
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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