Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1990
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             83   9e-19
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          33   0.002
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   5.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   5.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   7.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   7.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   10.0 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   10.0 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 83.4 bits (197), Expect = 9e-19
 Identities = 38/39 (97%), Positives = 39/39 (100%)
 Frame = +2

Query: 2    LVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLM 118
            LVEAV+AVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLM
Sbjct: 1048 LVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLM 1086



 Score = 32.7 bits (71), Expect = 0.002
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 2   LVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKV 100
           L  A++ +Q G++   RA   YG+P STL  KV
Sbjct: 596 LQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKV 628


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 32.7 bits (71), Expect = 0.002
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = +2

Query: 2   LVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVK 103
           + EA++AV+ G MS+++A  +Y +P+S+L  + K
Sbjct: 577 MTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFK 610



 Score = 29.9 bits (64), Expect = 0.012
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 2   LVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKER 109
           L  A+ A++ G +S ++A   +G+P STL YK+  R
Sbjct: 470 LNNALDALRTGTISANKASKAFGIPSSTL-YKIARR 504


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 269 ASPGFAPPPT 298
           ASPG+  PPT
Sbjct: 112 ASPGYVQPPT 121



 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +3

Query: 27  SEERCPCTAPALI--TVSH 77
           SEE+CP T  A I   +SH
Sbjct: 558 SEEQCPYTVDAAIYGNISH 576


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 269 ASPGFAPPPTPDLYASHMMRRLREEAPSPA 358
           A+P + PP   DL A    R + E   + A
Sbjct: 25  AAPDWVPPEVFDLVAEDKARCMSEHGTTQA 54


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 269 ASPGFAPPPTPDLYASHMMRRLREEAPSPA 358
           A+P + PP   DL A    R + E   + A
Sbjct: 25  AAPDWVPPEVFDLVAEDKARCMSEHGTTQA 54


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 103 LDFVFER*VWDTVIRAGAVHGHLSSLDCFHRLNE 2
           L + +E   W   + +G      +SLDCF  +N+
Sbjct: 537 LKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMND 570


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 103 LDFVFER*VWDTVIRAGAVHGHLSSLDCFHRLNE 2
           L + +E   W   + +G      +SLDCF  +N+
Sbjct: 537 LKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMND 570


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 58 AGAVHGHLSSLDCFHRLN 5
          + +VHGH   L   HR N
Sbjct: 42 SNSVHGHREGLGRRHRYN 59


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 58 AGAVHGHLSSLDCFHRLN 5
          + +VHGH   L   HR N
Sbjct: 43 SNSVHGHREGLGRRHRYN 60


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 10  GGESSPARRDVRAPRRLLLRCPTLNARIQSQ 102
           GG ++PA   +  P  L L    L A+I+ Q
Sbjct: 21  GGSTTPASPTLSTPPTLNLMEQILLAKIEKQ 51


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 366  RSWRGSSGQACS 401
            R WRGS+  AC+
Sbjct: 1325 RPWRGSATLACN 1336


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 366  RSWRGSSGQACS 401
            R WRGS+  AC+
Sbjct: 1321 RPWRGSATLACN 1332


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -1

Query: 399 CRLVRMIPSRSDPFAGEGASSRSRRIMCDAY 307
           C +V   P    P      S R   ++CD Y
Sbjct: 359 CNIVSCSPQTVHPETIIDVSRRRSSLICDVY 389


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 202 QAILKRTQRA*DSNVP 249
           +AILKR Q   D +VP
Sbjct: 769 EAILKRVQTPFDPDVP 784


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,246
Number of Sequences: 438
Number of extensions: 1838
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)