Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1988
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   4.7  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   4.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   8.1  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 214 ITQIIILRV*FLLHDVIPSPWKSIVNI 134
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 323 HRLPHPSNRNALLLHGRNR 267
           H LP+  N   L LHG NR
Sbjct: 196 HILPYTGNSRGLYLHGLNR 214


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 180 KNQTRKIIICVITGGRT 230
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 75   TGVRIPQAGTNFSNEIRTQQMF 140
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,096
Number of Sequences: 5004
Number of extensions: 36025
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)