Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1988
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   4.1  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   4.1  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    26   9.4  
AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a prote...    26   9.4  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 296 NALLLHGRNRRVGGTYPCG 240
           +A L+ GRN+R GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 296 NALLLHGRNRRVGGTYPCG 240
           +A L+ GRN+R GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 260 RPAYFCREAIMRFGLKGGAN 319
           RP YFC    MRFG +   N
Sbjct: 266 RPTYFCDRCPMRFGTESALN 285


>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 313 PTLQTETHYCFTAEIGGSVVPTRADSQEVLPPVITQIII 197
           P      ++ ++  +GG    T A+S EVL  ++T +I+
Sbjct: 149 PIATNNAYFIYSPTLGGFATKTVANSTEVLNSLVTFMIV 187


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +1

Query: 184 IKPAKL*FA*LLVVGPLVSPHG*VPPTRLFLP*SNNAFRFEGWGKRCDYTETLELYLKV 360
           +KPA       L   P+ S  G  PP+  F   SN   R E WG  C   ET + + K+
Sbjct: 612 VKPAVTPKVTTLSDSPMGSVSG--PPSSSFSKKSNGVRRKEHWGDLC--AETYQFFEKI 666


>AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a protein
           protein 32 protein.
          Length = 305

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 54  CIRI*RCTGVRIPQAGTNFSN-EIRT-QQMFTIDFHGEGITSCNK 182
           C ++ R     I + GT+F+   IR      ++DF G GI  CN+
Sbjct: 31  CRKVCRSLRTAIDKLGTHFNKISIRLWDNSVSVDFDGIGINYCNE 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,152,630
Number of Sequences: 27780
Number of extensions: 211018
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)