Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1984
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   6.7  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   6.7  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.9  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 290 LQNLIGARRLSNSLRHEVEATI 225
           L+NL   R + NS+RHEV+  +
Sbjct: 246 LKNLSNVRNVVNSIRHEVDRQV 267


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 397 ICMIYSLINLKVRTYTYAYFIY-NKKPFLYYNDIPINYYTE*YNTPLKPLKYAINKTRIN 573
           I    S I  K+ T  +  + Y N KP  +++D+P+    + +N   +  ++   K  I+
Sbjct: 8   ILQFRSKITGKLNTPDFRVYCYKNNKPISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEIS 67

Query: 574 L 576
           L
Sbjct: 68  L 68


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 210 THDELLTERYISSLAINTETKEKKISIVNSIYYFYSVL 97
           +H+E   E+ +S   +N     K +SI      FY+ +
Sbjct: 546 SHEETFNEQIVSHFNLNDNNNNKVLSIPRDSLQFYNAV 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,808
Number of Sequences: 5004
Number of extensions: 66840
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)