Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1983
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.36 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   2.5  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 376 HKIRNS*CSGSTNARARR*YRASQNLQLWRYQFFGFGCGFLTP 248
           H   N+  SGS   RAR+  R   N   W  + FG   G+ TP
Sbjct: 230 HSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNTP 272


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 287 VPIFWFRMRFPNTQVYYYIFLLNLLEKRSHEQAIK*LIRQDSILFIVEV 141
           VP+     R P+T V Y I  +NLL K    +A   ++    +L ++ +
Sbjct: 72  VPVLKSWYRVPSTGVEYAIQCVNLLYKHGWREAHNEMLTMQLLLMLLNI 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,676
Number of Sequences: 5004
Number of extensions: 37140
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)