Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1981
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    41   2e-04
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    35   0.011
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.94 
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   2.9  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   3.8  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   3.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.0  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   5.0  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   5.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.0  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   6.6  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    26   6.6  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 41/152 (26%), Positives = 69/152 (45%)
 Frame = +3

Query: 237 RPISVLPTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTDAGAYLIKNIFQSWE 416
           RP+++     K+ ++I+   L   ++   L +    GF  GRS   A    +++IF +++
Sbjct: 308 RPLTIGSPRDKLVQEILRIVLEAIYEP--LFNTASHGFRPGRSCHSA----LRSIFTNFK 361

Query: 417 ESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSS 596
                  I  D+   FD + H+ L+  L         ++LI   L+    T     NR  
Sbjct: 362 GC--TWWIEGDIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGYLTE----NRYK 415

Query: 597 GTTLKMGVPQGSILGPFLFLIYINDLPSFIES 692
              +  G PQGSI+ P L  IY++ L  FIE+
Sbjct: 416 YDIV--GTPQGSIVSPILANIYLHQLDEFIEN 445


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = +3

Query: 531 ELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSILGPFLFLIYINDL----PSFIESRH 698
           +++  +LSG I  +   GN  S    K+G+PQGSIL  FL   Y+ DL     SF + + 
Sbjct: 680 KMLKEHLSGHIVKI---GN--SQYLQKVGIPQGSILSSFLCHFYMEDLIDEYLSFTKKKG 734

Query: 699 EVVLFADDTSLLFKIKRQ 752
            V+L   D  L   + ++
Sbjct: 735 SVLLRVVDDFLFITVNKK 752


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 654 LIYINDLPSFIESRHEVVLFADDTSLLFK 740
           L+Y+ +  SF+E+ H  VLF D +S  F+
Sbjct: 823 LVYVIENTSFVEASHISVLFEDSSSKAFE 851


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 633 WNPEVHPFSTWCLKIYF 583
           WNP+V P + +C +++F
Sbjct: 307 WNPDVRPTAKYCKEVFF 323


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 204 KSGSTDDPSNYRPISVLPTLSKIFEKIILTQL 299
           K+GS DD S +R       L ++ EK+IL +L
Sbjct: 540 KNGSIDDFSVWRSAFANDALDRLLEKVILPKL 571


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 426 DCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQ 566
           D LG F   +    C+E   LVR     G++D   EL ++  S   Q
Sbjct: 34  DTLGTFNPAALPLPCLEKTMLVRSFDAQGLKDAVDELESNLKSSEDQ 80


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 399  IFQSWEESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSY 548
            +F   +ES DCL   C L+ A     H+T +R++  +  R     ++ +Y
Sbjct: 3615 LFLEKDESFDCLVRRCQLTLASMIPYHQTSLREIKKWLRRSELFNVLFTY 3664


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 72  GISVKVLKSVIDIIASHLVSIFNDCIKCGVFPDLMKHSKVIPLFKSGSTDDPSNY 236
           G+S  + KS+   + S  VS F D     V+PDL    +VI   +   TD+  NY
Sbjct: 591 GLSRSLSKSITFTLDSASVSEFED-----VYPDLQFQCQVIGALRILFTDNSLNY 640


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 560 DTNSRCERK*IFRHHVENGCTSGFHFGSFFISNIYK 667
           D NSRC+ K  F  H  N C    H  +  IS+IYK
Sbjct: 350 DCNSRCDTKYHFLGHKCNSC----HSYNTCISSIYK 381


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +3

Query: 225 PSNYRPISVLPTLSKIFEKIILTQLLEHFKSNNLLH-NKQFGFTRGR------STTDAGA 383
           P+N  P+ +    S  F +  L QL +  KSN+  +  KQF     R       TT+  A
Sbjct: 204 PNNTSPLKLFQGASDPFTREHLNQLTQDVKSNSFENGEKQFSLPEPRRPQKPMRTTERKA 263

Query: 384 YL-IKNIFQSWEE 419
            L  K+++Q  EE
Sbjct: 264 SLNTKDLYQEVEE 276


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 477 VQHSQMLWISHRKFQDNH 424
           V+H++++W+  RK  D H
Sbjct: 523 VEHNKLMWLKDRKMGDGH 540


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 165 PDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKII 287
           PDL  +     +F      + + Y PI+VLP+LS++ +  I
Sbjct: 344 PDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAI 384


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 177 KHSKVIPLFKSGS--TDDPSNYRPISVLPTLSKIFEKIILTQLLEHFKSNNLL 329
           K S V  L+++    T  P  Y     +PT  KIF  +I TQLL + +   L+
Sbjct: 71  KESGVSILYEANEDITQIPKVYGLCRFIPTEEKIFLDLIATQLLPNREYTGLV 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,308
Number of Sequences: 5004
Number of extensions: 68395
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)