Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1981
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 77 1e-14
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 76 2e-14
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 76 2e-14
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 76 2e-14
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 68 6e-12
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 64 1e-10
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 43 2e-04
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 34 0.094
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 31 0.66
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 31 0.66
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 31 0.66
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 31 0.66
AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally sym... 29 4.7
AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally sym... 29 4.7
Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical p... 28 6.2
Z82268-2|CAD89737.1| 389|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z70203-5|CAA94108.3| 429|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 77.4 bits (182), Expect = 1e-14
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 7/218 (3%)
Frame = +3
Query: 117 SHLVSIFNDCIKCGVFPDLMKHSKVIPLFKSGSTDDP---SNYRPISVLPTLSKIFEKII 287
S L ++N + + PD K + VI + K DP S+YRPIS+L ++K+ EK I
Sbjct: 365 SFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKK--DPAIASSYRPISLLSPIAKLLEKAI 422
Query: 288 LTQLLEHFKSNNLLHNKQFGFTRGRSTTDAGAYLIKNIFQSWEESHD---CLGIFCDLSK 458
L ++ +S H Q GF STT A + +I + + DL
Sbjct: 423 LKRIKNSIESP--AH--QHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRA 478
Query: 459 AFDCVEHETLVRKLHH-YGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMGVPQGSI 635
AFD V + L L GI + +YL R+ + S TL GVPQGS+
Sbjct: 479 AFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSV 538
Query: 636 LGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKR 749
+ P LF Y+ D+P+ + ++ +ADD S++ + K+
Sbjct: 539 ISPNLFTFYLKDMPT--QQDTMLISYADDMSIIARDKK 574
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 76.2 bits (179), Expect = 2e-14
Identities = 59/193 (30%), Positives = 82/193 (42%)
Frame = +3
Query: 75 ISVKVLKSVIDIIASHLVSIFNDCIKCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVL 254
IS LKS D + + FN + P K SK +FK G ++ NYRPI +L
Sbjct: 399 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 458
Query: 255 PTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTDAGAYLIKNIFQSWEESHDCL 434
P L K+F K +L ++ + +Q GF R ST D L + + E
Sbjct: 459 PVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLT 516
Query: 435 GIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKM 614
+F D KAFD VEH+ + + L G DGA + T +R +
Sbjct: 517 LVFIDFKKAFDTVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTK 575
Query: 615 GVPQGSILGPFLF 653
GV QG + P LF
Sbjct: 576 GVRQGDPISPNLF 588
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 76.2 bits (179), Expect = 2e-14
Identities = 59/193 (30%), Positives = 82/193 (42%)
Frame = +3
Query: 75 ISVKVLKSVIDIIASHLVSIFNDCIKCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVL 254
IS LKS D + + FN + P K SK +FK G ++ NYRPI +L
Sbjct: 570 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 629
Query: 255 PTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTDAGAYLIKNIFQSWEESHDCL 434
P L K+F K +L ++ + +Q GF R ST D L + + E
Sbjct: 630 PVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLT 687
Query: 435 GIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKM 614
+F D KAFD VEH+ + + L G DGA + T +R +
Sbjct: 688 LVFIDFKKAFDSVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTK 746
Query: 615 GVPQGSILGPFLF 653
GV QG + P LF
Sbjct: 747 GVRQGDPISPNLF 759
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 76.2 bits (179), Expect = 2e-14
Identities = 59/193 (30%), Positives = 82/193 (42%)
Frame = +3
Query: 75 ISVKVLKSVIDIIASHLVSIFNDCIKCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVL 254
IS LKS D + + FN + P K SK +FK G ++ NYRPI +L
Sbjct: 309 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 368
Query: 255 PTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTDAGAYLIKNIFQSWEESHDCL 434
P L K+F K +L ++ + +Q GF R ST D L + + E
Sbjct: 369 PVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLT 426
Query: 435 GIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKM 614
+F D KAFD VEH+ + + L G DGA + T +R +
Sbjct: 427 LVFIDFKKAFDSVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTK 485
Query: 615 GVPQGSILGPFLF 653
GV QG + P LF
Sbjct: 486 GVRQGDPISPNLF 498
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 68.1 bits (159), Expect = 6e-12
Identities = 38/98 (38%), Positives = 51/98 (52%)
Frame = +3
Query: 438 IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTTLKMG 617
I+ D SKAFD + H+ L+ KL L + +LS R V + SS G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 618 VPQGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSL 731
VPQG++L P LF IY+ND+ S + + FADDT L
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKL 114
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 456 KAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGS 632
KAFD V H L++KLH +GI +LS R +V V + + GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 633 ILGPFLFLIYINDLPSFIESRHEVVLFADD 722
+ GPFLFLI+IN L + FADD
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADD 91
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 402 FQSWEESHDCLG-IFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDV 578
++ + E+H + I LS AFD V HE L+ KL+ + + +S + +V V
Sbjct: 877 YEEYVEAHKRVDLIHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQV 936
Query: 579 KGN-RSSGTTLKMGVPQGSILGPFLFLIYINDL 674
+ S ++G P+GS F+FL++IN L
Sbjct: 937 NDHLESEKHNCQIGAPRGSESRQFMFLVFINSL 969
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 495 KLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGT-TLKMGVPQGSILGPFLFLIYIND 671
KL +G+ +L R +V + S + + GVPQGS+ GP LF+++IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 672 LPSFIESRHEVVLFADDTSL 731
L + + FADD +
Sbjct: 899 LLIDLAPTINISCFADDVKI 918
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 34.3 bits (75), Expect = 0.094
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = +3
Query: 393 KNIFQSWEESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTV 572
K+ +S + +F D KAFD VEH+ + + L G + ++L+ T
Sbjct: 25 KDFLKSAGNTRSLTLVFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYK-NCTTN 83
Query: 573 DVKGNRSSGTTLKMGVPQGSILGPFLF 653
R + GV QG + P LF
Sbjct: 84 FTPFLRPITVPVTKGVRQGDPISPNLF 110
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 525 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNHAIPPKIEIY 397
H P YH D H QHSQ L SH K NH + IY
Sbjct: 55 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYSRSPIY 98
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 525 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNHAIPPKIEIY 397
H P YH D H QHSQ L SH K NH + IY
Sbjct: 1695 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYSRSPIY 1738
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 525 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNHAIPPKIEIY 397
H P YH D H QHSQ L SH K NH + IY
Sbjct: 1796 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYSRSPIY 1839
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 525 HHP*YHSDVVSSPM-FHVQHSQMLWISHRKFQDNHAIPPKIEIY 397
H P YH D H QHSQ L SH K NH + IY
Sbjct: 1796 HDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYSRSPIY 1839
>AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform b protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 417 ESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGI 515
E+HDC DCV H TL + H G+
Sbjct: 236 ETHDCPVCKSQFMTRMDCVSHHTLEHENHREGL 268
>AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform a protein.
Length = 365
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 417 ESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGI 515
E+HDC DCV H TL + H G+
Sbjct: 262 ETHDCPVCKSQFMTRMDCVSHHTLEHENHREGL 294
>Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical
protein C55A6.1 protein.
Length = 228
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 63 DLWGISVKVLKSVIDIIASHLVSIFNDCIKCGVFPDLMKHSKVI 194
D GI VK L + + + L+S+FNDC C V P SK +
Sbjct: 181 DFDGIGVKGLAGIF--VPTSLISMFNDC--CNVKPVSKSSSKYV 220
>Z82268-2|CAD89737.1| 389|Caenorhabditis elegans Hypothetical
protein F52B11.1b protein.
Length = 389
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 397 FLIR*APASVVERPLVNPNCLL*SRLFDLKCSKSCVK 287
+++R A R +NPNC+ SR+ CS C K
Sbjct: 28 YIMRKAEPDKHPRQCLNPNCIYESRIDSKYCSDECGK 64
>Z70203-5|CAA94108.3| 429|Caenorhabditis elegans Hypothetical
protein C05G5.5 protein.
Length = 429
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 285 ILTQLLEHFKSNNLLHNKQ 341
+LT+LL +F NNL HN Q
Sbjct: 18 VLTRLLVYFLQNNLAHNSQ 36
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,887,302
Number of Sequences: 27780
Number of extensions: 369655
Number of successful extensions: 903
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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