Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1981
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.1  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 498 VSSPMFHVQHSQMLWISHRKFQ 433
           +SS ++  Q+++ +WI   K+Q
Sbjct: 360 ISSNIYERQNNEYIWIVSNKYQ 381


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 440 NSKTIMRFLPRLKYIFD*ISTCIS 369
           N+K  ++F P  K+I D + T IS
Sbjct: 879 NNKYALKFFPFDKHILDKLPTLIS 902


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 519 P*YHSDVVSSPMFHVQHSQMLWISHRKFQDN 427
           P Y S V+++ +      +++W+SH  F+ +
Sbjct: 100 PQYSSAVINTNVIVSHTGEVVWLSHGIFRSS 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,572
Number of Sequences: 438
Number of extensions: 4957
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)