Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1978
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   285   4e-79
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   1.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.4  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  285 bits (698), Expect = 4e-79
 Identities = 141/151 (93%), Positives = 146/151 (96%)
 Frame = +2

Query: 62  ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 241
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 242 IAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 421
           IAIYGLVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 422 QQPRLFVGMILILIFAEVLGLYGLIVAIYLY 514
           QQPRLFVGMILILIFAEVLGLYGLIVAIYLY
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLY 154


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 627 PPCIGFRS--TLPLLYITFV---PCSFSHISRPVQPCCCGCSASRDVNLYIFT 770
           PP +G++   + P   +TF    P + + I  PV+PC   C  + D    +++
Sbjct: 199 PPLVGWKDKRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYS 251


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = -1

Query: 517 CVQVDGDDKSVKTQYFSENKNKNHSDE*PRLLSSTTHACISHDAYGETGSQTRESYSQTS 338
           C+  D   +S+ TQ+    +++ HSD     L S  +A I +  + E+ ++       T 
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSDSCCLCLDS-MNAVIRN--FNESENRRNSCLGSTE 384

Query: 337 TQVDEPFVKGVVGWLLEGTSN 275
           T   +   +    ++ E +SN
Sbjct: 385 TYYSKHNTQQFTQYIPESSSN 405


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 277 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 179
           NQ  H    D  N  ++  ND+ H   + ++RH
Sbjct: 430 NQARHSSKSDNQN--NNQHNDQAHHSSKSNNRH 460



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -1

Query: 277 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 179
           NQD++    + N  RH  ++D  ++       H
Sbjct: 419 NQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAH 451


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 60  LKIIQSTDPSLELWGRRLLSSS 125
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 434 LFVGMI-LILIFAEVLGLYGLIVAIY 508
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 227 VMAGIIAIYGLVVAVLIAGALQEPANY 307
           +++G+I   GL++ VLI G++ E   +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISEEQKF 437


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 200 LIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPL 313
           L++ SII   + G I +    VAV +   L+ P NY L
Sbjct: 46  LVLGSIIVGTVIGNILV---CVAVFLVRKLRRPCNYLL 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,309
Number of Sequences: 438
Number of extensions: 5308
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)