Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1977
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    29   0.77 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    29   1.0  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   3.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   9.5  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.5  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 623 LSNY*TIF*WLAIKTSYLIIIPNIYRTLYNHININNHKPYNTY 495
           +SN  T+F WL+I  SY+I      +   ++  +  H P+  Y
Sbjct: 440 ISNLATLFVWLSINVSYIIYRLAFKKQGKSYDEVGYHSPFGIY 482


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -2

Query: 467 YFQQRGSHDVLT----LNNSSRPAKTLRSVNRGCYQISNSER 354
           Y    G H V+T     NN     K +RS+ +  Y+  N+ER
Sbjct: 59  YIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNER 100


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 74  KINIFGVLFFISRKTSRNFALRFRTVLLSS 163
           ++NI G    +  KTS N +  FRTVLL++
Sbjct: 239 RVNIVGQYRSMGSKTSGNTSATFRTVLLAN 268


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 79  YFNCIIDKRFILYFLYS 29
           Y  C+ +K+ IL FLYS
Sbjct: 297 YLTCVANKQLILVFLYS 313


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 226 NFHREPAFPGQNKNTNNN 173
           NF R+P FP  N+N  NN
Sbjct: 779 NFCRKPIFPFSNRNECNN 796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,197
Number of Sequences: 5004
Number of extensions: 55224
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)