Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1977
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80842-8|AAB37951.1|  244|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF099914-3|AAC68758.2|  265|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U80842-8|AAB37951.1|  244|Caenorhabditis elegans Hypothetical
           protein ZC239.12 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 53  SFVNNTIKINIFGVLFFISRKTSRNFALRFRTVL 154
           SF++  I++NI G +F  S+ T   F   F+T+L
Sbjct: 2   SFIDEKIRLNIGGTIFETSKSTLTKFDGFFKTLL 35


>AF099914-3|AAC68758.2|  265|Caenorhabditis elegans Hypothetical
           protein C40A11.4 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 59  VNNTIKINIFGVLFFISRKTSRNFALRFRTVL 154
           V++T+K+NI G  F  SR T  +F   F+T+L
Sbjct: 40  VSSTVKLNIGGEAFKTSRTTLSHFNGLFKTML 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,935
Number of Sequences: 27780
Number of extensions: 302961
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)