Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1977
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   1.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   7.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.6  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 560 PNIYRTLYNHININNHKPYNTYVQS*LRQYYY 465
           P I  +L N+ N +N+  YN    +  ++ YY
Sbjct: 79  PKIISSLSNNYNYSNYNNYNNNYNNYNKKLYY 110


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 557 NIYRTLYNHININNHKPYNTYVQS*LRQYY 468
           N Y+  YN+ N NN+   N Y  +  + YY
Sbjct: 327 NNYKYNYNNNNYNNNNYNNNYNNNCKKLYY 356


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -1

Query: 498 VRSVLTEAILLFPTAWQPRRTYLKQFQPPSKDLKIRQSWMLSD*Q-FGTTFLAH 340
           VR V     +  P   QP R Y ++  PP  D   +    + + + F TT   H
Sbjct: 226 VRYVSQWEEVYIPLYQQPERHYERRATPPQPDRTSKDQGTIGESEVFDTTRYPH 279


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 266 DTVYGHLTRHCKYKFPQGAG 207
           + +YG L  +C+  +P  AG
Sbjct: 360 EKIYGALEGYCRVAWPDDAG 379


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 266 DTVYGHLTRHCKYKFPQGAG 207
           + +YG L  +C+  +P  AG
Sbjct: 360 EKIYGALEGYCRVAWPDDAG 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,557
Number of Sequences: 438
Number of extensions: 4262
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)