Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1975
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    31   0.064
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    29   0.19 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.26 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   0.34 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   1.8  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   2.4  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   2.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   4.2  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   4.2  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    23   9.6  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 30.7 bits (66), Expect = 0.064
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = -3

Query: 240 ASTNPSKSV-IRSCGQNEKQSTSPQTRHFGSS----RSTNGAFRYLKHRSSFSSKPSLAT 76
           A++ P  S  ++S  Q       PQT+   S+     + N      ++  SFS KPS+A 
Sbjct: 210 AASRPKVSFSLQSSRQPSIAEEQPQTQRKSSAITVEHAENAEPETPRNNVSFSRKPSIAE 269

Query: 75  KGSTSKLTLRHNPLSFSPNLFSGS 4
           + S+  +T+  N +    +L SGS
Sbjct: 270 QDSSQDITMPPNEIIAEESLDSGS 293


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 201 GQNEKQSTSPQTRHFGSSRST-NGAFRYLKHRSSFSSKPSLATKGSTSKLTLRHNPLS 31
           G++      P+   +G+SR+    +  YL+ R S + + SL+   STS+ T +   LS
Sbjct: 257 GESRNLMVDPKVSPYGNSRTPLRDSSNYLRDRRSINRQSSLSIPKSTSETTRKTLALS 314


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -3

Query: 198 QNEKQSTSPQTRH-FGSSRSTNGAFRYLKH-RSSFSSKPS--LATKGSTSKLTLRHNPLS 31
           Q    S + QT+  FG  R+ N A   L+H RS+ S  PS  L+ + ST + +   +  S
Sbjct: 663 QRMSNSFASQTKQVFGEQRTENSARESLRHSRSNMSRSPSPMLSRRSSTLRPSFERSASS 722

Query: 30  FS 25
            S
Sbjct: 723 LS 724


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = -3

Query: 258  LKPDDVASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLA 79
            LKP   +S + + S I S   +   ST P+T  F SS + + +   +   S      S  
Sbjct: 928  LKPSLTSSVSTASSYIASSASSNTLSTEPKT--FSSSSTLSESISSINTNSLTVKPESSL 985

Query: 78   TKGSTSKLTLRHNPLSFSPNLFSGS 4
            +  +TS LT   + +  S    S S
Sbjct: 986  SSSTTSGLTSSSSTIPSSTRSESNS 1010


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 170 KHVISDPPDPLTVLLGTSSTGH 105
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -3

Query: 246 DVASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGS 67
           D   +  S S I+S     KQ++        +S +T      +    +FSSK +LAT  +
Sbjct: 151 DPTRSTRSSSHIQSLSPESKQTSDGHRPPSPTSITTTSTS--IDPSVAFSSKSTLATTRT 208

Query: 66  TSKLTLRHNPLSFSP-NLFS 10
            + L+    P   SP N FS
Sbjct: 209 NAPLSRPSQPTKASPLNKFS 228


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 261 GLKPDDVASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRS 142
           GL PD V S+N      R     + Q + P     GSS S
Sbjct: 104 GLTPDLVGSSNALNKPTRESDSLKHQKSHPMLNSLGSSLS 143


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 246 DVASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYL---KHRSSFSSKPSLAT 76
           D +S   S S +   G +E  S    +    S R    A R     K+R S  SKP +  
Sbjct: 2   DESSRIASSSALH--GLDEMVSAHKPSPPLPSRRKGKSALRSALEKKNRKS-KSKPKVTI 58

Query: 75  KGSTSKLTLRHNPLS 31
              T K++ +H+P+S
Sbjct: 59  TSDTPKVSSQHSPVS 73


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 177 SPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTSKLTLRHNPLSFSPNL 16
           SP T++ GS+ +T  +   L+  SSF  +     K  T   T  +NP S S  L
Sbjct: 89  SPSTQNVGSTNNTRASQSLLRRSSSFFRRRH--RKNGTHAST-DNNPFSESSTL 139


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = -3

Query: 231 NPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTSKLT 52
           NP+++      +N+ QS S  +   GSS   N A       S+     +L T  + S   
Sbjct: 6   NPNETEASEDAENDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALNTTPNESTSQ 65

Query: 51  LRHNP 37
           +  +P
Sbjct: 66  IDSSP 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,962
Number of Sequences: 5004
Number of extensions: 19407
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)