Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1975
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 29 0.93
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 1.6
01_06_0475 + 29610268-29610711 28 1.6
05_04_0090 + 17833897-17834364 27 2.8
06_03_0823 - 25026949-25027551,25027635-25027742,25027994-250281... 27 3.8
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 27 5.0
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 26 8.7
09_02_0300 - 7073153-7073589,7074058-7074169 26 8.7
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345 26 8.7
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 29.1 bits (62), Expect = 0.93
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = -3
Query: 243 VASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGST 64
V + PS+ + + Q++ + RH SS S N A + + S P ++ + S+
Sbjct: 349 VTNFEPSRYNLEAISQSDLPISVSGRRHNSSSNSNNPA-PEAGGQITLMSSPPISQQSSS 407
Query: 63 SKLTLRHNPLSFSP 22
+ L HN L F P
Sbjct: 408 APPYLIHNLLQFQP 421
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 225 SKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFS 97
S+S + G+ + QSTSPQ R ++S+ A + + R S++
Sbjct: 680 SRSCSPATGRQDNQSTSPQRREKHQTKSSGQAKEHDEKRRSYT 722
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = -3
Query: 264 TGLKPDDVASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPS 85
T P ++S+ PS+S R+ + S SP T H + + A+R L + SS +
Sbjct: 49 TSSSPSPMSSSPPSRSSTRATLTHSPSSASPDTNH-ADHVAVSCAYRRL---ALLSSSRA 104
Query: 84 LATKGSTSKLTLRHN 40
G+ L+L H+
Sbjct: 105 ATHPGTNVALSLIHD 119
>05_04_0090 + 17833897-17834364
Length = 155
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 142 GSGGSEMTCLGRRRLLFILSAGSDHALARVRA 237
G+GG +GR R + +AG+ H RVRA
Sbjct: 55 GAGGDARRGVGRHRQTWSEAAGARHGAGRVRA 86
>06_03_0823 -
25026949-25027551,25027635-25027742,25027994-25028107,
25028200-25028309,25028432-25028520,25028637-25028833,
25028961-25029122,25029255-25029373,25029488-25029541,
25029687-25029769,25029894-25029982,25030105-25030257,
25030373-25030465,25032070-25032136,25032238-25032350,
25033466-25033561,25034415-25034594
Length = 809
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 240 ASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFR 124
AS ++ SCGQ+ K ++ FG +R GA++
Sbjct: 725 ASAEVGDTITLSCGQHSKTISAINVTSFGVARGQCGAYK 763
>02_05_0311 +
27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 153 SSRSTNGAFRYLKHRSSFSS 94
+ R TNG +LKHRS +SS
Sbjct: 450 AKRKTNGKLIHLKHRSLYSS 469
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 153 SSRSTNGAFRYLKHRSSFSSKP 88
+S STNG R LKH++ S P
Sbjct: 108 NSNSTNGTSRLLKHQAKCSPHP 129
>09_02_0300 - 7073153-7073589,7074058-7074169
Length = 182
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 71 PFVASDGFDENDDRCLRYL--KAPLVDREDP 157
P + DGFDE+ D L Y K PLV P
Sbjct: 85 PVLFRDGFDEDYDNTLSYFSKKKPLVPLPPP 115
>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
Length = 347
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -3
Query: 249 DDVASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGA 130
DD AS P+ ++ ++CG E RH R A
Sbjct: 288 DDAASKTPAAALCKACGAGEASMLLLPCRHLCLCRGCEAA 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,718,926
Number of Sequences: 37544
Number of extensions: 133224
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -