Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1975
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    33   0.069
U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical pr...    30   0.37 
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    30   0.37 
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    29   0.64 
U64842-8|AAB37085.1|  173|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   2.0  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = -3

Query: 249 DDVASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKG 70
           D  ASTN + SVIRS G     S S  T    S  S  G+   L   SS S +P+    G
Sbjct: 8   DPFASTNRASSVIRSGG----LSNSDYTPRISSYTSRYGSTDQLNSSSSSSYRPTSYRAG 63

Query: 69  S-TSKLTLRHNPLSFSP-NLFSGS 4
           S TS     ++  S++P N+ +GS
Sbjct: 64  SITSGGNSSNSTSSYTPRNVRAGS 87


>U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical
           protein C01F4.2b protein.
          Length = 622

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 198 QNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTS--KLTLRHNPLSFS 25
           ++ + STS +   F S       +R  KHR+ F S+ S   K      +LTLRH  +  S
Sbjct: 107 KSPQMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 198 QNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTS--KLTLRHNPLSFS 25
           ++ + STS +   F S       +R  KHR+ F S+ S   K      +LTLRH  +  S
Sbjct: 107 KSPQMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 240 ASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYL---KHRSSFSSKPSLAT 76
           +ST+ S S +RS G  + QST+P      S      +  Y     +  S SS PS +T
Sbjct: 664 SSTSTSFSAVRSSGYGQNQSTTPNRAKTPSDGFAGSSPHYTNGNNNNKSSSSSPSTST 721


>U64842-8|AAB37085.1|  173|Caenorhabditis elegans Hypothetical
           protein F25B4.9 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 192 EKQSTSPQTRHFGSSRSTNGAFRYLKHRS 106
           EK++    + + GS+ S NG FR+++HRS
Sbjct: 146 EKKAAYSASSYSGSNNSVNG-FRFMRHRS 173


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 206 PADRMKSSRRRPKHVISDPPDP 141
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -3

Query: 252  PDDVASTNPSKSVIRSCGQNEKQSTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSL--A 79
            P    S NPS S   +   N  QSTSP         +++G+ +      S  ++PS    
Sbjct: 1259 PSTSQSPNPSTSGSSTPTPNPSQSTSPVVSTTTGEMTSHGSTQTPSTIGSTVTQPSTVSG 1318

Query: 78   TKGSTSKLTLRHNPLSFSPNLFSGS 4
            +  S S +T+  +  S S + F  S
Sbjct: 1319 SNSSGSTVTIGSSEASTSGSSFKTS 1343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,478,769
Number of Sequences: 27780
Number of extensions: 110967
Number of successful extensions: 360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)