Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1973
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    66   3e-13
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.3  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 65.7 bits (153), Expect = 3e-13
 Identities = 36/81 (44%), Positives = 48/81 (59%)
 Frame = +3

Query: 114 IVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGK 293
           I   + + + DG Y  NFETSNGI   E+G+ K+    DN+  V+   +GS SYT  DG+
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVVS--QGSDSYTAPDGQ 83

Query: 294 PETITYFADETGYHAQGESIP 356
             +ITY ADE G+  QG  IP
Sbjct: 84  QVSITYVADENGFQVQGSHIP 104


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 171 TSNGIVRSETGELKEAL 221
           TS G  R  TGE+KEA+
Sbjct: 403 TSKGEYRMSTGEMKEAI 419


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -2

Query: 577 FLYQMNFIVFVHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRHT 431
           F Y+   +V + +  KT + +    + N+A+S+ L  +  ++W+  R T
Sbjct: 15  FTYEQ--LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,691
Number of Sequences: 438
Number of extensions: 3050
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)