Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1972
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50070-12|CAA90398.2|  554|Caenorhabditis elegans Hypothetical p...    29   3.4  
AL032651-3|CAB60582.1|  554|Caenorhabditis elegans Hypothetical ...    29   3.4  
U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine rece...    28   7.9  

>Z50070-12|CAA90398.2|  554|Caenorhabditis elegans Hypothetical
           protein F43G6.5 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 349 SRASQNLPPDRKRDLLRKSDEKRNGLCLWVNLLVE 245
           SR+S  +  +  +D L   D  +NG C W++LL E
Sbjct: 333 SRSSMKVIQEEMKDALITCDNIQNGSCNWMDLLEE 367


>AL032651-3|CAB60582.1|  554|Caenorhabditis elegans Hypothetical
           protein F43G6.5 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 349 SRASQNLPPDRKRDLLRKSDEKRNGLCLWVNLLVE 245
           SR+S  +  +  +D L   D  +NG C W++LL E
Sbjct: 333 SRSSMKVIQEEMKDALITCDNIQNGSCNWMDLLEE 367


>U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 3 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 104 FYFYGATIFNFNYLRIFTVIFLIFFYCIDVWTSS 3
           F    AT+FNF  L   T++F +F+Y I  + S+
Sbjct: 248 FLNVAATLFNFCVLIYGTLVFSLFYYLIPQFRSA 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,463
Number of Sequences: 27780
Number of extensions: 323112
Number of successful extensions: 867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)