Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1966
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.2  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   5.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.3  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    20   9.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 189 PVPWPISAATLVRKSAAKTGHGCPHPA 269
           P P P SAAT +  S   +    P PA
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPPA 37


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 79   LTSHNEIFCGFCDPPRSTDG 138
            +TS + + C FCD P  + G
Sbjct: 1048 MTSDSIMKCAFCDTPFISKG 1067


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 166 TARVFTQHGHRQ*NEEDHKNRRKFHCGSSNDGLSMAIDEFNS 41
           T  +  +HG    N   HK + +FH   +ND L +    F +
Sbjct: 80  TNNISDKHGFTILNSM-HKYQPRFHLVRANDILKLPYSTFRT 120


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 161 PRFHSARPPSVERGGSQKP 105
           PR   ARPPS       KP
Sbjct: 408 PRPEWARPPSTPSADGSKP 426


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 115 HKNRRKFHCGSSNDGLSMAIDEFNS 41
           HK + +FH   +ND L +    F +
Sbjct: 105 HKYQPRFHLVRANDILKLPYSTFRT 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,685
Number of Sequences: 336
Number of extensions: 2061
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)