Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1966
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   0.60 
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    27   1.8  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.3  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   7.3  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.3  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    24   9.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    24   9.7  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    24   9.7  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   9.7  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 299 VANECCLHPCTLEVLLSY 352
           V NEC +HPC +E ++++
Sbjct: 348 VCNECSMHPCDIEEIIAW 365


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 168 PTAVATWPVPWPISAATLVRKSAAKTGHGC 257
           P  V+    PW   AA + RK  A    GC
Sbjct: 154 PVGVSALITPWNFPAAMIARKGGAALAAGC 183


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 312  HSLATP-FSVTAPSLRPDADSHDQSSPRFS 226
            +S  +P +S T+PS  P + S+  +SP +S
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPSYS 1635


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -2

Query: 362 GFNS---RKAEPLGCRGGGSTRWRRHSQS 285
           GFNS   RK E    RGG ++  RRH  S
Sbjct: 81  GFNSVESRKKEQSDVRGGDTSYSRRHDDS 109


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 204 ISAATLVRKSAAKTGHGCPHPAVRMAP*LR 293
           IS+AT +  SAA+     P P  R  P LR
Sbjct: 628 ISSATTIHSSAAQDDTYLPSPTKRKMPLLR 657


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 382  HRRTCCLDLTVGKQNL*GAGVEAALVGDAILSHGAILTAG 263
            HRR   LD+T+    L  A   A LV   + + G +  AG
Sbjct: 1197 HRRKAVLDVTLADNFLHAANKGAKLVVGGVGAAGGLALAG 1236


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 299  RHSQSRRHPYGRMRTAMTSLRRAFPDQRRCRDWPRYGPGS 180
            R SQ  R  +GR R   TS RR+        ++  +GP S
Sbjct: 992  RGSQFLRSSHGRSRERSTSARRSRRFSEANSEFDEFGPFS 1031


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 168 PTAVATWPVPWPISAATLVRKSAAKTGHGC 257
           P  V     PW   AA + RK  A    GC
Sbjct: 159 PVGVVGIITPWNFPAAMITRKVGAALAAGC 188


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 298 RRQRVLPPPLHPRGSAFLLLNPDNMFY 378
           +R  VLPPP     S+  LL   + FY
Sbjct: 343 KRNAVLPPPFFKNRSSAALLACSSFFY 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,412
Number of Sequences: 5004
Number of extensions: 32050
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)