Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1966
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0828 - 21596570-21597337 33 0.15
02_02_0111 - 6904318-6904767 31 0.45
03_06_0426 + 33855701-33856135 30 1.0
06_03_1159 + 28084786-28085428,28085520-28086166 29 2.4
10_01_0334 - 3680612-3681266,3682253-3682374 28 3.1
08_02_0830 - 21617485-21618198 28 3.1
08_02_0366 - 16301133-16302592,16302702-16302750 28 3.1
10_08_0989 + 22069244-22071679 28 4.2
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 4.2
06_03_1000 - 26778993-26779478 28 4.2
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323... 27 5.5
03_01_0272 + 2105579-2105671,2105779-2105882,2106006-2107014,210... 27 5.5
01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116... 27 5.5
11_06_0702 + 26432798-26432890,26434021-26434416 27 7.3
05_03_0581 + 15736732-15736778,15737021-15737846 27 7.3
03_05_1045 - 29914581-29914829,29914840-29916083,29919055-299191... 27 7.3
03_05_0292 + 22846273-22846377,22847161-22847823 27 7.3
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 27 7.3
08_02_0989 + 23368902-23369363,23370299-23370304 27 9.6
08_01_0608 - 5339541-5340177,5340555-5340877 27 9.6
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400... 27 9.6
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 27 9.6
04_04_1100 + 30894575-30895012,30896082-30897044 27 9.6
02_05_0040 + 25341418-25341810 27 9.6
02_04_0470 - 23183925-23184743,23184929-23185153 27 9.6
02_01_0213 + 1416721-1417440 27 9.6
>08_02_0828 - 21596570-21597337
Length = 255
Score = 32.7 bits (71), Expect = 0.15
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Frame = -2
Query: 365 SGFNSRKAEPLGCRGGGSTRWRRHSQSRRHPYGRMRTAMTSLRRAFPDQRR---CRDWPR 195
S +S + CR RW H + G ++ TS R + R C W
Sbjct: 77 SSSSSSSGSAIPCRADACERWDAHKNKKAG--GSAASSSTSSRASGGSPGRADSCERWDA 134
Query: 194 YG-PGSDRSRYGPRFHSARPPSVERGGSQK 108
+ PGS S G + R SVER S K
Sbjct: 135 HKTPGSPASSTGSNGSACRSDSVERWDSSK 164
>02_02_0111 - 6904318-6904767
Length = 149
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 184 VATAVGTARVFTQHGHRQ*NEEDHKNRRKFH 92
VA +GT R TQ GH+ + H R K H
Sbjct: 28 VAATIGTLRTLTQQGHQHTEQSSHGCRCKLH 58
>03_06_0426 + 33855701-33856135
Length = 144
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 353 SRKAEPLGCRGGGSTRWRRHSQSRRH 276
+R A+P+G GGG WRR +SR H
Sbjct: 108 ARMAQPVGGSGGGGA-WRRRRRSRGH 132
>06_03_1159 + 28084786-28085428,28085520-28086166
Length = 429
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 164 RTYCGRYLARTLANLCSDAGQEKRGEDWSWLSASGRKDGAV-TENGVANECCLHPCTLEV 340
R+ C R +A S G +R ED +A+G DG + + + L+P T +V
Sbjct: 48 RSGCSRSIANLRDVFHSQYGGSRRQEDAVAAAAAGEGDGGCGSPRSIGSNDVLNPVTHDV 107
Query: 341 LLS 349
LL+
Sbjct: 108 LLA 110
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -2
Query: 332 GCRGGGSTRWRRHSQSRRHPYGRMRTAMTSLRRAFP 225
GC GG RR QSRR GR +S RR+FP
Sbjct: 180 GCCGGHGRSRRRRGQSRRARGGR---KSSSSRRSFP 212
>08_02_0830 - 21617485-21618198
Length = 237
Score = 28.3 bits (60), Expect = 3.1
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Frame = -2
Query: 365 SGFNSRKAEPLGCRGGGSTRWRRHSQSRRHPYGRMRTAMTSLRRAFPDQRRCRDWPRYG- 189
S +S + L CR RW H + G + +S R R + R+
Sbjct: 77 SSSSSSSSSGLPCRADSCERWDAHKNKKA---GGSAASSSSRARGGISPGRADSYERWDA 133
Query: 188 ---PGSDRSRYGPRFHSARPPSVERGGSQK 108
PGS S G R SVER S K
Sbjct: 134 HKTPGSPASSTGSSRSPCRADSVERWDSNK 163
>08_02_0366 - 16301133-16302592,16302702-16302750
Length = 502
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 321 WRQHSLATPFSVTAPSLRPD 262
W ++S+ATP V P+LRP+
Sbjct: 258 WTEYSVATPTIVAPPALRPE 277
>10_08_0989 + 22069244-22071679
Length = 811
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 341 EPLGCRGGGSTRWRRHSQSRRHPYGRMRTAMTSLRRAFPDQRRCRDWPR 195
+ +G G TRW H ++ H G T L D + DWPR
Sbjct: 470 QEMGLARPGDTRWGSHYKTILHIIGMYPTIHEVLITLGKDPTQRDDWPR 518
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.9 bits (59), Expect = 4.2
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -2
Query: 326 RGGGSTRWRRHSQSRRHPYGRMRTAMTSLRRAF--PDQRRCRDWPRYGPGSDRSRYGPRF 153
RG S RR HP A +LR A P++RR D P ++ + P
Sbjct: 81 RGAASPPARRRGGDL-HPSHPPEAASEALRGAASPPERRRGGDRQPSHP-TEAASEAPS- 137
Query: 152 HSARPPSVERGGSQKP 105
SA PP+ RGG Q+P
Sbjct: 138 GSASPPARRRGGDQQP 153
>06_03_1000 - 26778993-26779478
Length = 161
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 186 WPVPWPISAATLVRKSAAKTGHGCPHPAVRM 278
+PVP ++A + R AA T CP PA ++
Sbjct: 125 FPVPHDLAAVFVARAPAATTSPPCPPPAKKI 155
>07_03_0984 -
23131468-23131679,23132082-23132209,23132300-23132365,
23134421-23134515,23135292-23135340,23135428-23135487,
23135580-23135701,23135799-23135840,23135944-23135992,
23136095-23136166,23136638-23136738,23136835-23136910,
23137002-23137081,23137196-23137307,23137391-23137454,
23137540-23137603,23138544-23138570
Length = 472
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 144 C*VKTRAVPTAVATWPV 194
C KT A P+AVA+WP+
Sbjct: 444 CKKKTSAAPSAVASWPI 460
>03_01_0272 +
2105579-2105671,2105779-2105882,2106006-2107014,
2107130-2107153
Length = 409
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 335 LGCRGGGSTRWRRHSQSRRH-PYGRMR 258
LGC GG R RR +S H P GR R
Sbjct: 5 LGCFGGAKERRRRRKRSPAHSPSGRAR 31
>01_06_0188 -
27310814-27311138,27311197-27311547,27311682-27311693,
27313598-27313662,27314945-27314968
Length = 258
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 332 GCRGGGSTRWRRHSQS--RRHPYGRMRTAMTSLRRAFPDQR-RCRDWPR 195
G R GGS+R RH RRH R A + +R + ++R + W R
Sbjct: 203 GGRRGGSSRHERHDDGGRRRHGGSPPRRARSPVRESSEERRAKIEQWNR 251
>11_06_0702 + 26432798-26432890,26434021-26434416
Length = 162
Score = 27.1 bits (57), Expect = 7.3
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Frame = -2
Query: 344 AEPLGCRGGGSTRWRRHSQSR-RHPYGRMRTAMTSLRRAFPDQRRCRDWPRY----GPGS 180
A P G R RWRR ++ + + G + +R R P Y G G
Sbjct: 46 ARPAGARSRRERRWRRPARRKEKGDGGEVARDHGRMREGAKTGERIEGVPFYRRGEGAGH 105
Query: 179 DRSRYGPRFHSARP 138
R R G H RP
Sbjct: 106 GRGRNGDGKHGRRP 119
>05_03_0581 + 15736732-15736778,15737021-15737846
Length = 290
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 156 FSLSTATVSRTRRITKTAENFIVARQTTDCRWLLMNLIQLN 34
F LSTA V RR T + + A + + WLL L+ +N
Sbjct: 232 FYLSTALVDAVRRATAWLPDNMNASRLENLYWLLAVLVAIN 272
>03_05_1045 -
29914581-29914829,29914840-29916083,29919055-29919199,
29919727-29919792,29919882-29920108,29920204-29920310,
29920428-29920502,29920600-29920688,29920768-29920848,
29921631-29921702,29922056-29922178
Length = 825
Score = 27.1 bits (57), Expect = 7.3
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Frame = -2
Query: 332 GCRGGGSTRWRRHSQSRRHP-YGRMRTAMTSLRRAFPDQRRCRDWPRYGPGSDRSRYGPR 156
GC GG R RR Q+RR P GR+ R D RR R GS R P
Sbjct: 721 GCGAGGGGR-RRARQARRRPRRGRLSNIYLDANRK-DDARRVRKL----IGSRGIRKVPA 774
Query: 155 FHSARPPSVERG----GSQKPQKISLWLVKRRTVD 63
+ V PQ++ +W V R D
Sbjct: 775 YSEVEVDGVVSSFVADDQAHPQRVEIWEVLRLLAD 809
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 226 GKARRRLVMAVRIRP*GWRRD*EWRRQR 309
G AR R + V R WRR WRR+R
Sbjct: 144 GGARGRAAVLVDERRRSWRRQWSWRRRR 171
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 27.1 bits (57), Expect = 7.3
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Frame = -2
Query: 317 GSTRWRRHSQSRRHPYGRMRTAMTSLRRAFPDQRRCRDWPRYGPGSDRSRYGP--RFH-- 150
GS R R S+S R Y + + RR + D R Y PG S +G R H
Sbjct: 160 GSHRRRSVSRSPRSRYHSYSPSPSPARRDYRDHR-----DDYSPGESLSPHGQDKRHHRS 214
Query: 149 ---SARPPSVERGGSQKPQKISLWL 84
SA P +ER Q + S W+
Sbjct: 215 NGRSASPDELERHARQAFEVWSSWI 239
>08_02_0989 + 23368902-23369363,23370299-23370304
Length = 155
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 362 GFNSRKAEPLGCRGGGSTRWR 300
G + R A P G GGG RW+
Sbjct: 105 GRHRRAARPAGSGGGGGVRWK 125
>08_01_0608 - 5339541-5340177,5340555-5340877
Length = 319
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 284 VTENGVANECCLHPCTLEVLLSYC 355
VT NG+A + P E++LSYC
Sbjct: 123 VTSNGLAQMIAMAPLLEELVLSYC 146
>07_03_0935 -
22738221-22738328,22739207-22739237,22739901-22740095,
22740693-22740782,22740900-22741037,22741959-22742108,
22743589-22744766
Length = 629
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 69 CRWLLMNLIQLNKLPFESSCLPE 1
CR N+I+LN+ PF + CL E
Sbjct: 506 CRKRCSNVIKLNESPFLAECLKE 528
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 332 GCRGGGSTRWRRHSQSRRHPYGR 264
G GGGST R SR HPYG+
Sbjct: 387 GMGGGGSTSGR--GSSRYHPYGK 407
>04_04_1100 + 30894575-30895012,30896082-30897044
Length = 466
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -3
Query: 382 HRRTCCLDLTV-GKQNL*GAGVEAALVGDAI-LSHGAILTAGCGQP*PVFAALFLTSVAA 209
HRR+CC+ + V G+ L G A G+ + + +GA+ + +A+ L VA
Sbjct: 283 HRRSCCMGVVVDGRTRLRRDGAMGAYFGNVLTIPYGAMSSGD-------LSAMPLADVAG 335
Query: 208 EIGQGTGQVAT 176
++ + + AT
Sbjct: 336 DVHRWVAEAAT 346
>02_05_0040 + 25341418-25341810
Length = 130
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -2
Query: 323 GGGSTRWRRHSQSRRHPYGRMRTAMTSLRRAFPDQRRCRDWPRYGPGSDRSRYG 162
GG RR + RR G R RR +RRC P+ G+ R R+G
Sbjct: 66 GGAGVPRRRRAAPRRRCGGSKRRCSGPQRRRGAPRRRC-SGPQLRCGAPRWRHG 118
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +1
Query: 112 CDPPRSTDGGRAE*KRGPYLLRSLPGPYL----GQSLQRRWS-GKAR 237
C PP G+A +RG ++ S P L G + RWS KAR
Sbjct: 133 CQPPHPKPAGKATPRRGRWVATSSLPPSLPAQPGMRVAHRWSPAKAR 179
>02_01_0213 + 1416721-1417440
Length = 239
Score = 26.6 bits (56), Expect = 9.6
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -3
Query: 331 GAGVEAALVGDAILSHGAILTAGCGQP*PVFAALFL---TSVAAEIGQGTGQVATAVGTA 161
GAGV AA+ A + GA AG G AA+ + A +G G G A G A
Sbjct: 168 GAGVGAAIGAGAKAAIGAGAGAGAGVGAGAKAAIGVGAGVGAGAAVGAGVGAAAKVAGAA 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,610,536
Number of Sequences: 37544
Number of extensions: 282254
Number of successful extensions: 1256
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -