Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1965
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   3.2  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    26   7.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   7.4  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 335  LKEKFLLCDNTYDLTSYIRLTAGNL*PMTISVAKLLSNDIRIAINVERSQY 183
            L EKF+L  + Y L   ++ +  +   +++S+ KLLS     A+   R QY
Sbjct: 1082 LAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQY 1132


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 302 KYCHTVKTFLLECWPQKSLLNSNFELFMKIK 394
           K C+ VKT+  E   QK   + N+  F+K++
Sbjct: 25  KTCYNVKTYSTESIKQKKPQDLNWPTFLKLR 55


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +2

Query: 347 QKSLLNSNFELFMKIK----MYTFRILH*TCDRIYDLTRYIKESRVSYTI 484
           + SL+N   E    +K    MY  RI    CD  YD TR  K++ +  TI
Sbjct: 847 KSSLINFMLEKHTNLKEESSMYWLRI----CDGFYDFTRLEKQAEIVSTI 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,417
Number of Sequences: 5004
Number of extensions: 69763
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)