Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1965
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 347 QKSLLNSNFELFMKIKMYTFRILH*TCDRIYDLTRYIKE-SRVSYTIYYSRTAELIWLKI 523
           + +L    FEL +    +   ++H     ++ L +  KE  R++  I++++ AEL+W KI
Sbjct: 491 EAALKKIRFELTISENEFPPIVMHHASRMLWHLRQQKKELKRLNKEIHFAKAAELLWPKI 550


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 347 QKSLLNSNFELFMKIKMYTFRILH*TCDRIYDLTRYIKESRVSYTIYYS 493
           + +L  SN ++F KI  + F      CD    L  + + SR+ +T +Y+
Sbjct: 595 KNALKTSNIQIFSKIASFFFEFFSDFCDSYSCLKIFFRISRI-FTFFYN 642


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,520,860
Number of Sequences: 27780
Number of extensions: 386468
Number of successful extensions: 879
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)