Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1963
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    22   4.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.8  

>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 413 RCEVDGCELRFNDTSXLQYAIPLDVEKQRPQSCFM 517
           RC  DG EL+ N    ++       EKQ+  S F+
Sbjct: 57  RCSPDGLELKKNMPDAIETDCSKCSEKQKEGSDFI 91


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 393 SNIKPHSKKLLSRTGYSRSTKFSK 322
           S ++PH  + + ++GY++ T   K
Sbjct: 163 SGLRPHLLENVKKSGYTKPTAIQK 186


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 138  TVITYSLQKLLCYT 97
            TV  Y+L+KLLC T
Sbjct: 1448 TVEKYTLEKLLCGT 1461


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,834
Number of Sequences: 336
Number of extensions: 3477
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)