Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1963
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    30   0.30 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   3.6  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    26   4.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   4.8  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    26   6.4  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   6.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   6.4  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = +2

Query: 482 DVEKQRPQSCFMYQQANVTSQQCLPEDFINKTVPCERFVYENDYSFVKEFNLVCQEWKRA 661
           D E    + C  ++  ++T+   L    +   + C R  Y ++ S   +F+LVC +    
Sbjct: 153 DTELLGNEYCLEWKNPHLTNVGTLKAPILRLVIKCVRCHYGSEISIATKFSLVCNKCSNT 212

Query: 662 L-----VGTIHNSGMFVAMLFT 712
           L      G IH +   + +L T
Sbjct: 213 LRLVWVPGVIHPNNARLGILHT 234


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 377 TRRSCSAGPGTVGARNSVNCSARTDPSSPVSNLN-*FLSCLPPFCTGNSYFDGRAPL 210
           T +   AG  T  +      SA TDP SPVS  N  FL+ L P   GN  +  ++PL
Sbjct: 161 TPQRAGAGVSTATSHTRRRSSAGTDPFSPVSPSNPNFLTPLKPI-DGNQEWQ-QSPL 215


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 177 WVIVYIKLTIL*RSAAIEIRISRTKWRKARKKSI*IRYWRAWVR 308
           WVI Y +   + R+A ++  +   KWR   K S+       W+R
Sbjct: 228 WVIGYSQSPRVFRAANVKPEVMNFKWRSNGKASMTTAIMEEWLR 271


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 364 QLLRVRLYIRGSGTELQMRSRRLRVKV 444
           ++L    YIRG GT + + +R+ RVK+
Sbjct: 244 RILSENFYIRGDGTRVLIVNRKKRVKM 270


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 501 LNPASCTSKQTLRVSSVCLKTSSIKLCLARDL 596
           L P+   S Q ++VSS+C+   S+  C A  L
Sbjct: 316 LAPSVAISLQRIKVSSLCILYPSLACCFADSL 347


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 28/86 (32%), Positives = 40/86 (46%)
 Frame = -1

Query: 541 TRNVCLLVHEAGLRTLFLHVQRDSVLQXGCIIKP*LATVYFASVILFLSLEYKAALEEAA 362
           TR +CL +HE     L  H  RD+  Q    IK  L      S +L L    + + E+  
Sbjct: 16  TRTLCLRIHE-----LKQH-SRDADDQNPEQIKRQLM-----SKLLILREANRKSYEQLV 64

Query: 361 QQDRVQ*EHEIQ*IVAPVRTQALQYR 284
           Q   +  EH+ +   A +R QALQY+
Sbjct: 65  QAKTITAEHKSELDNARIRLQALQYK 90


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 525 KQTLRVSSVCLKTSSIKLCL 584
           K ++ +S+ C KTSSI LCL
Sbjct: 402 KVSMELSNPCAKTSSIFLCL 421


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 454 ILXAVRYPAGRGETASSILLHVPASKRYESAVF 552
           +L  V Y  G    A ++L+H+PA + +   VF
Sbjct: 695 VLPQVGYTQGMSWIAGALLMHLPAPQAFALLVF 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,755
Number of Sequences: 5004
Number of extensions: 58783
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)