Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1963
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0194 + 6552638-6552895,6553088-6553246,6553551-6553702,655... 32 0.41
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 31 0.94
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692 31 1.2
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 29 2.9
11_06_0412 - 23235670-23236512,23236804-23237838 29 3.8
10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660... 29 3.8
06_03_0916 - 25932934-25933090,25933170-25933276,25933356-259334... 29 5.0
08_02_0799 - 21317728-21317895,21318018-21318146,21318396-213184... 28 6.6
>10_02_0194 +
6552638-6552895,6553088-6553246,6553551-6553702,
6553741-6553804
Length = 210
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 651 HSWQTRLNSLTKE*SFS*TNLSQGTVLLMKSSGKHC*LVTFACWYMKQ 508
H W + L ++ + S TN +GT+ L SS +TFACWY+ Q
Sbjct: 45 HLWNSILQHQKEQQTKSATNQLRGTIFLAGSS------LTFACWYLVQ 86
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 31.1 bits (67), Expect = 0.94
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Frame = -3
Query: 428 RLLRICNSVPE---PRI*SRTRRSCSAGPGTVGARNSVNCSART----DPSSPVSNLN*F 270
RL R CNS P+ P R RR +AG G GA S C T +P +P
Sbjct: 90 RLPRACNSKPKPPPPPPPERPRRRAAAGGGAGGAEESPQCRVVTPLVSEPEAPAEMPRWR 149
Query: 269 LSCL 258
L C+
Sbjct: 150 LRCM 153
>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
Length = 1171
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -1
Query: 550 TLLTRNVCLLVHEAGLRTLFLHVQ--RDSVLQ 461
TL T+NV LL + LRTL LHV+ +D VLQ
Sbjct: 1053 TLFTQNVLLLGSVSSLRTLRLHVKQNQDGVLQ 1084
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 217 ARPSKYEFPVQNGGRQERNQFRFDTGELGSVRALQFTEFRAPTVPGPAEQLLRVRLYIRG 396
AR +K++ + ++++NQ+ + ELGS R LQ E E+ L Y+
Sbjct: 698 ARSNKWDDSIIESWKKKKNQYESEMSELGSPRELQRKELAVSEKITGLEKKLH---YLNV 754
Query: 397 SGTELQMRSRRL 432
L+ + RRL
Sbjct: 755 EENNLREKLRRL 766
>11_06_0412 - 23235670-23236512,23236804-23237838
Length = 625
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +2
Query: 533 VTSQQCLPEDFI------NKTVPCERFVYENDYSFVKEFNLVCQEWKRALVGTIHNSGMF 694
V+ ++ LPED + TV C R + + SF ++ + +E ++ALV H+ +
Sbjct: 488 VSKRKLLPEDILVSKKTLQDTVQCAREMLKGCNSFQSVYDKLMEEPQKALVPDAHDMNLS 547
Query: 695 VAMLFTGAI 721
+L GAI
Sbjct: 548 GNILQQGAI 556
>10_02_0197 +
6596197-6596402,6596766-6596828,6599679-6599795,
6600311-6600545,6600771-6600929,6601159-6601310,
6602511-6602571
Length = 330
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 651 HSWQTRLNSLTKE*SFS*TNLSQGTVLLMKSSGKHC*LVTFACWYMKQ 508
H W + L + + + TN +GT+LL+ SS +ACWY+ Q
Sbjct: 166 HLWNSILQHQNEPATKTATNQLRGTILLVASS------FAYACWYLVQ 207
>06_03_0916 -
25932934-25933090,25933170-25933276,25933356-25933422,
25933509-25933624,25933873-25933944,25934055-25934255,
25934652-25934728,25935131-25935230
Length = 298
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +2
Query: 395 AQEQNYRCEVDGCELRFNDTSXLQYAIPLDVEKQRPQSCFMYQQANVTSQQCLPEDFINK 574
++E Y E + FN + Q ++P+ + +CF+ + T + +P++ N
Sbjct: 41 SREPRYHVEFHPVDAPFNPENG-QESVPMTSHVGKHYTCFLPVEETKTMKSIIPQNATNV 99
Query: 575 TVPCERFVYEND 610
+ ER V D
Sbjct: 100 IIESERRVKPKD 111
>08_02_0799 -
21317728-21317895,21318018-21318146,21318396-21318457,
21318519-21318534,21318590-21318694,21318993-21319133,
21319338-21319412,21319510-21319611,21319697-21319792,
21320340-21320451,21320642-21320715,21321016-21321097,
21321201-21321508
Length = 489
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 465 STLSRWTWRNSVLNPASCTSKQTLRVSSVCLKTSSIKL 578
ST R + S N CT K+T R + +C+K +S K+
Sbjct: 21 STRDRILYGYSHSNAKECTCKKTKRPAPLCVKATSTKV 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,680,170
Number of Sequences: 37544
Number of extensions: 365576
Number of successful extensions: 809
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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