Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1963
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z66567-7|CAC42386.3|  414|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF199013-1|AAG28557.1|  414|Caenorhabditis elegans organic catio...    31   0.64 
U97194-2|AAN84846.1|  806|Caenorhabditis elegans Prion-like-(q/n...    30   1.5  
U97194-1|AAK68236.1|  788|Caenorhabditis elegans Prion-like-(q/n...    30   1.5  
AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative MAP-...    30   1.5  
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    29   2.6  
Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-...    28   7.8  
U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical
           protein ZK455.8a protein.
          Length = 757

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 584 CERFVYEN---DYSFVKEFNLVCQE-WKRALVGTIHNSGMFVAMLFTGAISDRF 733
           C+ + Y+    D + V E+N VC   W RA V   ++ G  V     G ISDR+
Sbjct: 279 CKEWEYDTSVMDRTIVTEWNRVCDNNWSRAHVHMSYSLGYLVGCFVGGFISDRY 332


>Z66567-7|CAC42386.3|  414|Caenorhabditis elegans Hypothetical
           protein ZK455.8b protein.
          Length = 414

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 608 DYSFVKEFNLVCQE-WKRALVGTIHNSGMFVAMLFTGAISDRF 733
           D + V E+N VC   W RA V   ++ G  V     G ISDR+
Sbjct: 2   DRTIVTEWNRVCDNNWSRAHVHMSYSLGYLVGCFVGGFISDRY 44


>AF199013-1|AAG28557.1|  414|Caenorhabditis elegans organic cation
           transporter protein.
          Length = 414

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 608 DYSFVKEFNLVCQE-WKRALVGTIHNSGMFVAMLFTGAISDRF 733
           D + V E+N VC   W RA V   ++ G  V     G ISDR+
Sbjct: 2   DRTIVTEWNRVCDNNWSRAHVHMSYSLGYLVGCFVGGFISDRY 44


>U97194-2|AAN84846.1|  806|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform b protein.
          Length = 806

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 ECGFIFEAQEQNYRCEVDGCELRFNDTSXLQYAI 475
           +C  +     Q + C  DGCE RF  T+ L+Y I
Sbjct: 418 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHI 451


>U97194-1|AAK68236.1|  788|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform a protein.
          Length = 788

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 ECGFIFEAQEQNYRCEVDGCELRFNDTSXLQYAI 475
           +C  +     Q + C  DGCE RF  T+ L+Y I
Sbjct: 400 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHI 433


>AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative
           MAP-like protein protein.
          Length = 788

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 ECGFIFEAQEQNYRCEVDGCELRFNDTSXLQYAI 475
           +C  +     Q + C  DGCE RF  T+ L+Y I
Sbjct: 400 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHI 433


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +2

Query: 578 VPCER-FVYENDY---SFVKEFNLVC--QEWKRALVGTIHNSGMFVAMLFTGAISDRF 733
           VPC+  + Y+N     S V EFNLVC  Q W   +  T    G F+     G ++D+F
Sbjct: 123 VPCQNGWDYDNSTYLDSLVTEFNLVCDQQAWIE-ISTTSFYVGSFIGNCLFGYVADKF 179


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +2

Query: 578 VPCER-FVYENDY---SFVKEFNLVC--QEWKRALVGTIHNSGMFVAMLFTGAISDRF 733
           VPC+  + Y+N     S V EFNLVC  Q W   +  T    G F+     G ++D+F
Sbjct: 106 VPCQNGWDYDNSTYLDSLVTEFNLVCDQQAWIE-ISTTSFYVGSFIGNCLFGYVADKF 162


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +2

Query: 578 VPCER-FVYENDY---SFVKEFNLVC--QEWKRALVGTIHNSGMFVAMLFTGAISDRF 733
           VPC+  + Y+N     S V EFNLVC  Q W   +  T    G F+     G ++D+F
Sbjct: 106 VPCQNGWDYDNSTYLDSLVTEFNLVCDQQAWIE-ISTTSFYVGSFIGNCLFGYVADKF 162


>Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical
           protein C27C12.2 protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 398 QEQNYRCEVDGCELRFNDTSXLQYAIPLDVEKQRPQSCFMYQQA 529
           Q++ Y+C  DGC+ RF+ +  L   I +    Q+P  C +  +A
Sbjct: 370 QDRPYKCPRDGCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRA 412


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 462 CSTLSRWT-WRNS-VLNPASCTSKQTLRVSSVCLKTS 566
           C  LS W+ W  +   N  +C + QTL  +  CLKT+
Sbjct: 708 CRLLSSWSEWTTTGTCNQTACGTCQTLTYTRTCLKTN 744


>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical protein
            T06D8.10 protein.
          Length = 1490

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 536  TSQQCLPEDFINKTVPCERFVYENDYSFVK 625
            T+  C+  +   +   C+RF YEND S  K
Sbjct: 1331 TTMSCIIAEQFGRLKKCDRFYYENDNSAAK 1360


>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical protein
            T06D8.10 protein.
          Length = 1490

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 536  TSQQCLPEDFINKTVPCERFVYENDYSFVK 625
            T+  C+  +   +   C+RF YEND S  K
Sbjct: 1331 TTMSCIIAEQFGRLKKCDRFYYENDNSAAK 1360


>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           1 protein.
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 497 RPQSCFMYQQANVTSQQCLPEDFINKTV 580
           RP    +Y  +  +  +CLPEDF  +TV
Sbjct: 557 RPVKQSIYASSATSESKCLPEDFCTQTV 584


>U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical
           protein K05F1.6b protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +2

Query: 584 CERFVYENDY---SFVKEFNLVCQEW-KRALVGTIHNSGMFVAMLFTGAISDR 730
           C+ + +E D    + V +FNLVC  W  +      ++ G  +  +  G  SD+
Sbjct: 99  CQAYHFEKDVMVETIVTDFNLVCDSWFAKGHAHMFYSIGYLLGCVLGGIASDK 151


>U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical
           protein K05F1.6a protein.
          Length = 773

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +2

Query: 584 CERFVYENDY---SFVKEFNLVCQEW-KRALVGTIHNSGMFVAMLFTGAISDR 730
           C+ + +E D    + V +FNLVC  W  +      ++ G  +  +  G  SD+
Sbjct: 245 CQAYHFEKDVMVETIVTDFNLVCDSWFAKGHAHMFYSIGYLLGCVLGGIASDK 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,252,377
Number of Sequences: 27780
Number of extensions: 335887
Number of successful extensions: 871
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)