Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1961
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    27   5.3  
AC103567-4|AAL35731.2|  598|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 314 RKKSLNGLNLIEVQLNIC*YGIKRTVNYKDKYRLNKITFHLSIYC---NSNFIIFNF 475
           R+KS     LIE++  +     +R V Y  K+R     F +++ C   NS+ + F F
Sbjct: 4   RRKSKGNRVLIEIETTVVYRETQRMVIYMPKHRKRGYCFSVALSCTSLNSSILFFIF 60


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 428 RLFCLSDIYLCN*QCVLFRISICLIELQLSLVHSKIFFVKIFSPNFK 288
           + FC + IY       +  ++IC+    LSL     FF KIF PN K
Sbjct: 356 KTFCYTTIYFAFKAKSI--VTICVSHHHLSLNLKFFFFYKIFFPNSK 400


>AC103567-4|AAL35731.2|  598|Caenorhabditis elegans Hypothetical
           protein Y51F10.4 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 33  LFSSIRVFFYLTFFSHKTHG 92
           +++++ VF Y+ F+SH+ HG
Sbjct: 282 MYAAVGVFGYVAFYSHELHG 301


>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 419 CLSDIYLCN*QCVLFRISICLIELQLSLVHSKIFFVKIFSPN 294
           C +   LCN  C L  +SI L     S+ H   FF  + SPN
Sbjct: 39  CFTMFLLCNNFCRLLVVSIIL--FYQSVTHPHRFFFFLSSPN 78


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 389 QCVLFRISICLIELQLSLVHSKIFFVKIFSPN 294
           +C ++R  +C+  + LS+ H   + + IF P+
Sbjct: 600 RCAIWRELVCVYPIHLSIFHDIGYAIPIFCPS 631


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,391,954
Number of Sequences: 27780
Number of extensions: 182623
Number of successful extensions: 395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)