Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1961
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.73 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.9  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   5.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 395 YKDKYRLNKITFHLSIYCNSNFIIF 469
           YKDK  L  +   L + C  NF+I+
Sbjct: 146 YKDKTILYMVKLTLKLSCAMNFLIY 170


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 186 MSLQNSNRDTHEFRKSNCIYFFFWNCNMLYICRVS 82
           ++  + N DTHE  +   + F +W   +L + R S
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWLPCILRMSRPS 350


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 240 FCLSDILAILQESHLKFKIWRKYLNEKN 323
           FCL  ILA+ +ES  K +       E+N
Sbjct: 10  FCLVGILAVSEESINKLRKIESVCAEEN 37


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 392 NYKDKYRLNKITFHLSIYCNSNFI 463
           N   KY  N   ++  +Y N N+I
Sbjct: 92  NNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 392 NYKDKYRLNKITFHLSIYCNSNFI 463
           N   KY  N   ++  +Y N N+I
Sbjct: 92  NNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 392 NYKDKYRLNKITFHLSIYCNSNFI 463
           N   KY  N   ++  +Y N N+I
Sbjct: 92  NNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 392 NYKDKYRLNKITFHLSIYCNSNFI 463
           N   KY  N   ++  +Y N N+I
Sbjct: 92  NNNYKYNYNNNNYNKKLYYNINYI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,205
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)