Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1960
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    29   0.75 
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   7.0  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   9.2  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.2  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 331  RVAQGWRAAERPHRRVFASR 390
            RVA+GW+    P RR+FA R
Sbjct: 1169 RVAKGWKLEHNPVRRIFAPR 1188


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = +1

Query: 301 CAILVCTLMGRVAQGWRAAERPHRRVFASRRVFYKISHTGTDGIREYRREHCLLESQRG 477
           C  LVC L G +   W A  +       + + F  IS    + + ++       E +RG
Sbjct: 125 CVYLVCLLFGMLGSMWFALVKTTSNSIGN-QAFIGISEACAEALTQFSVSEVFFEHERG 182


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 616 FFYRFPITIFSNRQRLL 666
           FFY +P ++FSNR ++L
Sbjct: 349 FFYFYPPSVFSNRYQIL 365


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 374 RRCGLSAARQPCATLPINV--HTRIAQHD*PTSQTLHKHY*AHRITSG*SETRPRA 213
           RR   S  ++P + L I     +R   H+ P+S  LH+H  AH +TS    T+  A
Sbjct: 398 RRPPSSINQRPPSNLRILAPSRSRATIHERPSSSILHRH--AHSLTSSSFSTKTLA 451


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 710 NYPRGLQRTHKSAYYSSLCLFEKIVMGKR*KKINVKSI-RNLRTSTHLFLFLYLYIVICE 534
           NYPR L +     Y + +CL    V+ K      ++++      + HL+ F Y ++ + +
Sbjct: 624 NYPRALFQVFVGLYLAEVCLIGLFVLAKNWGATVLEAVFLGFTVACHLY-FKYKFLPLMD 682

Query: 533 EI 528
            +
Sbjct: 683 AV 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,982
Number of Sequences: 5004
Number of extensions: 60424
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)