Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1960
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48006-1|CAA88047.1| 642|Caenorhabditis elegans Hypothetical pr... 55 5e-08
Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical pr... 34 0.13
AF063007-2|AAC16433.1| 583|Caenorhabditis elegans Hypothetical ... 30 2.1
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 4.9
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein. 29 4.9
Z49068-4|CAC42319.1| 705|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF047651-9|AAC02720.2| 509|Caenorhabditis elegans Hypothetical ... 28 6.5
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 28 8.6
>Z48006-1|CAA88047.1| 642|Caenorhabditis elegans Hypothetical
protein F19C6.1 protein.
Length = 642
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +2
Query: 425 MELENIVANTVYLKAREXXXXXXXXXXXXWRKILQFPHISQCIDIKTKI 571
ME+ENIVANTVY+KARE W+ LQFPH ++C+ +KT+I
Sbjct: 1 MEIENIVANTVYIKARE-SGGQKKGKSKKWKNYLQFPHYTECLPLKTEI 48
>Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 414 VTDFIEDPPRSKNPPMRPLC-RPPALRDSAHQCTHQDRTARLTHKSNFTQTLLST 253
V D PP + +P ++ C +PP +R HQ + T T S +T +ST
Sbjct: 61 VKDVNPSPPATSSPNVQTQCHQPPVVRSQTHQASVSQTTPTQTTPSQYTPASVST 115
>Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 414 VTDFIEDPPRSKNPPMRPLC-RPPALRDSAHQCTHQDRTARLTHKSNFTQTLLST 253
V D PP + +P ++ C +PP +R HQ + T T S +T +ST
Sbjct: 61 VKDVNPSPPATSSPNVQTQCHQPPVVRSQTHQASVSQTTPTQTTPSQYTPASVST 115
>AF063007-2|AAC16433.1| 583|Caenorhabditis elegans Hypothetical
protein R119.7 protein.
Length = 583
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +1
Query: 319 TLMGRVAQGWRAAERPHRRVFASRRVFYKISHTGTDGIREYRREHCLLE 465
TL GR E H A +F K+ H G G YR+EH E
Sbjct: 70 TLHGRQLHIRPLRESSHANSEAISTMFEKVKHQGNSGNSSYRQEHSFPE 118
>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 322 MYTPGSHSTTNPQVKLYTNT 263
MY+PGS T P KL TNT
Sbjct: 1523 MYSPGSKQQTGPGAKLNTNT 1542
>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 322 MYTPGSHSTTNPQVKLYTNT 263
MY+PGS T P KL TNT
Sbjct: 1517 MYSPGSKQQTGPGAKLNTNT 1536
>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 322 MYTPGSHSTTNPQVKLYTNT 263
MY+PGS T P KL TNT
Sbjct: 1523 MYSPGSKQQTGPGAKLNTNT 1542
>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 322 MYTPGSHSTTNPQVKLYTNT 263
MY+PGS T P KL TNT
Sbjct: 1517 MYSPGSKQQTGPGAKLNTNT 1536
>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
Length = 1800
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 322 MYTPGSHSTTNPQVKLYTNT 263
MY+PGS T P KL TNT
Sbjct: 1541 MYSPGSKQQTGPGAKLNTNT 1560
>Z49068-4|CAC42319.1| 705|Caenorhabditis elegans Hypothetical
protein K01C8.3b protein.
Length = 705
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 364 PHRRVFASRRVFYKISHTGTDGIREYRREHCLL 462
P R F S ++++ I G DG+++Y REH L
Sbjct: 427 PLSRRFRSLKLWFVIRMYGIDGLQKYIREHVRL 459
>Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical
protein K01C8.3a protein.
Length = 650
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 364 PHRRVFASRRVFYKISHTGTDGIREYRREHCLL 462
P R F S ++++ I G DG+++Y REH L
Sbjct: 427 PLSRRFRSLKLWFVIRMYGIDGLQKYIREHVRL 459
>AF047651-9|AAC02720.2| 509|Caenorhabditis elegans Hypothetical
protein C05D2.3 protein.
Length = 509
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 346 WRAAERPHRRVFASRRVFYKISHTGTDGIREYRRE 450
+R E P R F S +V++ + + G + IREY+R+
Sbjct: 377 YRHLEVPLGRRFRSLKVWFTMRNMGVEKIREYQRK 411
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 405 FIEDPPRSKNPPMRPLCRPPALRDSAHQCTHQDRT 301
+IE PP +PP P PP L+ Q QD T
Sbjct: 130 YIEAPPPPPSPPPPPPPPPPQLQQQQVQLPLQDAT 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,522,312
Number of Sequences: 27780
Number of extensions: 358117
Number of successful extensions: 952
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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