Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1959
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 311 6e-86
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 214 1e-56
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 178 8e-46
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 158 9e-40
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 152 5e-38
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 129 4e-31
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 124 2e-29
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 119 4e-28
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 115 7e-27
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 112 5e-26
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 106 3e-24
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 104 1e-23
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 102 5e-23
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 102 7e-23
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 102 7e-23
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 101 9e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 101 9e-23
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 96 4e-21
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 92 7e-20
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 89 7e-19
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 86 6e-18
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 70 3e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 2e-12
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.24
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.32
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.56
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.3
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 3.0
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 3.0
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 5.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 6.9
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 6.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 311 bits (764), Expect = 6e-86
Identities = 145/232 (62%), Positives = 176/232 (75%)
Frame = +3
Query: 81 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 260
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 261 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 440
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 441 PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 620
P + GDGPI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVE
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVE 247
Query: 621 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 776
I IATPGRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI++QIRP
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 214 bits (523), Expect = 1e-56
Identities = 102/231 (44%), Positives = 147/231 (63%), Gaps = 4/231 (1%)
Frame = +3
Query: 96 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 272
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 273 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 452
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 453 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 632
G+GPIA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVC 547
Query: 633 TPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 776
TPGR+ID L TNL RCTYLVLDEADRM D+GFEPQ+ +II IRP
Sbjct: 548 TPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRP 598
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 178 bits (433), Expect = 8e-46
Identities = 86/196 (43%), Positives = 126/196 (64%), Gaps = 3/196 (1%)
Frame = +3
Query: 192 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 371
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 372 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 542
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 543 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 722
R V GG EQ+ + +G IV+ATPGRL+D LE+ L +CTY+V+DEADRM
Sbjct: 352 LGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRM 411
Query: 723 LDMGFEPQIRKIIEQI 770
LDMGFE + KI+ +
Sbjct: 412 LDMGFEDDVNKILSSL 427
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 158 bits (383), Expect = 9e-40
Identities = 84/199 (42%), Positives = 121/199 (60%), Gaps = 13/199 (6%)
Frame = +3
Query: 207 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 386
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 387 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 527
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 528 DFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 707
F + S+VR V+GGA R Q R +++G +++ ATPGRL+D +++G +L +LVLD
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLD 336
Query: 708 EADRMLDMGFEPQIRKIIE 764
EADRMLDMGFEPQIR I+E
Sbjct: 337 EADRMLDMGFEPQIRHIVE 355
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 152 bits (369), Expect = 5e-38
Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 3/196 (1%)
Frame = +3
Query: 183 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 353
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 354 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 533
G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSL 259
Query: 534 GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 713
+ ++ V+GGAPK EQAR + ++I TPGRL+D + G+ + + YLVLDEA
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEA 318
Query: 714 DRMLDMGFEPQIRKII 761
DRMLD GFE IR II
Sbjct: 319 DRMLDTGFEQDIRNII 334
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 129 bits (312), Expect = 4e-31
Identities = 74/177 (41%), Positives = 108/177 (61%), Gaps = 3/177 (1%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 429 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 605
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA L
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 606 ERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 770
+ +++ TPGRL+D LE KG +L+ YL++DEADR+LDM F P I KI++ I
Sbjct: 162 SKKPHVLVCTPGRLMDHLENTKG-FSLKNLKYLIMDEADRLLDMDFGPIIDKILKII 217
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 124 bits (298), Expect = 2e-29
Identities = 73/200 (36%), Positives = 123/200 (61%), Gaps = 4/200 (2%)
Frame = +3
Query: 177 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 356
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 357 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 530
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
Query: 531 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVL 704
+ V GGA +R +A L +GV +++ATPGRL+D L+ KG + LV+
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVI 242
Query: 705 DEADRMLDMGFEPQIRKIIE 764
DEADR+L++GFE ++R+I++
Sbjct: 243 DEADRILEIGFEDEMRQIMK 262
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 119 bits (287), Expect = 4e-28
Identities = 61/174 (35%), Positives = 97/174 (55%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
+ + AL+L+P RELA Q +V DF + +R+ + GG EQ L
Sbjct: 131 LKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187
Query: 609 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 770
+IV+ATPGR + + L Y+V DEADR+ +MGF Q+ +I+ +
Sbjct: 188 GKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHAL 241
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 115 bits (277), Expect = 7e-27
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
+ +P ++ L+L PTRELA Q VA + + GG + Q ++L
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 609 RGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 764
+ +IVIATPGR ID + ++ +V+DEADRML+ GF ++ +II+
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQ 431
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 112 bits (270), Expect = 5e-26
Identities = 58/171 (33%), Positives = 94/171 (54%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
++ + + L+L PTRELA Q QV G V+ GG R+ L
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 609 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 761
V IV+ TPGR++D KG + CT V+DEAD++L F P I +++
Sbjct: 161 DTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLL 211
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 106 bits (255), Expect = 3e-24
Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Frame = +3
Query: 297 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI--RRGDG 464
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 465 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 635
A+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 636 PGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 770
PGRL D LE ++ + ++VLDE DR++DMGFE + KI+ +
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYL 322
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 104 bits (250), Expect = 1e-23
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GA 578
+ + G G AL++APTRELA QI V + G V + + G G
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 579 PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 758
+ A E+ +VI TPGRL + L + + L+LDEAD ++DMGF+ ++ I
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSI 178
Query: 759 IEQI 770
I Q+
Sbjct: 179 ISQL 182
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 102 bits (245), Expect = 5e-23
Identities = 58/179 (32%), Positives = 94/179 (52%)
Frame = +3
Query: 240 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 419
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 420 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 599
+ I+ +++ AL+LAPTRELAQQIQ+V G V GG R+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMA 132
Query: 600 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 776
L+ GV +V+ TPGR+ D +++ VLDEAD ML GF+ QI I + + P
Sbjct: 133 ALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPP 191
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 102 bits (244), Expect = 7e-23
Identities = 62/198 (31%), Positives = 100/198 (50%)
Frame = +3
Query: 183 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 362
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 363 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 542
++ AQ+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 543 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 722
V+ GG + L+ G +V TPGR+ D + + + L+LDEAD +
Sbjct: 116 MNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADEL 175
Query: 723 LDMGFEPQIRKIIEQIRP 776
L+ GF+ QI I + P
Sbjct: 176 LNQGFKEQIYDIYRYLPP 193
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 102 bits (244), Expect = 7e-23
Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 1/197 (0%)
Frame = +3
Query: 183 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 362
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 363 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 542
++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 543 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADR 719
+ GG +E+ L R + I++ TPGRL+ +++ + L+LDEADR
Sbjct: 138 HSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADR 196
Query: 720 MLDMGFEPQIRKIIEQI 770
+LDMGF + I+ +
Sbjct: 197 ILDMGFRTTLDAIVSSL 213
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 101 bits (243), Expect = 9e-23
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 3/183 (1%)
Frame = +3
Query: 219 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 398
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 399 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQVAADFGH--TSYVRNTCVF 569
AY++P + + Q I G AL+L PTRELAQQ+ V + ++R V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVA 125
Query: 570 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 749
+ Q L +IVIATP R + + G L + +LV+DEAD ML G+ +
Sbjct: 126 TNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDM 185
Query: 750 RKI 758
+ +
Sbjct: 186 KTL 188
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 101 bits (243), Expect = 9e-23
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 4/167 (2%)
Frame = +3
Query: 249 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 428
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 429 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
+ P G AL+L PTRELA QI + A G +++ + GG Q+ DL
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 609 RGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGF 737
+ +V+ATPGRL D + E+ L+R +LV+DEADR+L F
Sbjct: 124 KRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 96.3 bits (229), Expect = 4e-21
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Frame = +3
Query: 300 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 473
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 474 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 653
LV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 654 FLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 764
+ + T N ++ LVLDEADR+L ++ K++E
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLE 294
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 92.3 bits (219), Expect = 7e-20
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 3/188 (1%)
Frame = +3
Query: 216 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 392
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 393 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 572
KTLA++L A + P +++L+PTRELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
Query: 573 GAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQ 746
G K + + RG ++IATPGRL D L+ T +LDEADR++DMGF
Sbjct: 149 GNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAES 208
Query: 747 IRKIIEQI 770
I I E +
Sbjct: 209 ILNIHEAV 216
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 89.0 bits (211), Expect = 7e-19
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Frame = +3
Query: 240 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 413
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 414 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 593
+ ++ P P A+ LAP+RELA+QI V + G + V+ FG K
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSV 223
Query: 594 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 728
+ + +IVI TPG ++D +++ + + VLDEAD MLD
Sbjct: 224 PKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 268
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 85.8 bits (203), Expect = 6e-18
Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 4/224 (1%)
Frame = +3
Query: 102 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 275
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 276 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 452
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 453 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIVI 629
G A+++APTREL +QI + A + ++ + K +E+A L ++ I
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCI 171
Query: 630 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 761
TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+
Sbjct: 172 GTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHIL 214
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 70.1 bits (164), Expect = 3e-13
Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Frame = +3
Query: 339 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 518
P+ G ++ A TGSGKTL+Y++P + ++++ R +V+ PTREL Q+ +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQVAK 223
Query: 519 VAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT-NL 680
+ + ++ G R + L E ++++++TPGRL+D + + +L
Sbjct: 224 TFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSL 283
Query: 681 QRCTYLVLDEADRMLDMGFEPQIRKIIEQI 770
Q Y+V+DEADR+LD F+ + ++ +I
Sbjct: 284 QHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 67.7 bits (158), Expect = 2e-12
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Frame = +3
Query: 282 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 461
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 462 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIV 626
G ++ LVL TRELA QI+ A F + VR +GG + E +D + IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 627 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 728
+ATPGRL + + + + VLDE D++L+
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 360 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 512
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 360 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 512
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.24
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 348 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 506
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.32
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +3
Query: 462 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 641
G + L TR +++ Q DF G P R L++G+E VI TP
Sbjct: 93 GRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPP 149
Query: 642 RLIDFLEKGTTNLQRCTYL 698
RL+ ++ + NLQR +++
Sbjct: 150 RLLMNKDEISLNLQRLSHM 168
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.56
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +3
Query: 357 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 536
+N++ TG GKT + A+V +N +R + +APT+ L Q Q+ A +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQ--QMEACYK 138
Query: 537 HTSYVRN-TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 713
T ++ T G + + TP +++ ++ G + R + LV+DEA
Sbjct: 139 ITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEA 198
Query: 714 DR 719
R
Sbjct: 199 HR 200
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 297 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 437
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 3.0
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +3
Query: 207 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 386
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 387 SGKTLAYILPAIVHINNQPPIRRGD 461
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 465 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 608
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 311 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 186
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 171 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 302
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 171 PYEVEEYRNKHEVTVS 218
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 146 WIIKVFVERLE*NRIPIWASHVLPSREF 63
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +3
Query: 522 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 689
A FG S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 690 TYLVLDE 710
TY V E
Sbjct: 275 TYQVSGE 281
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 300 PLSLHLVAHNQENL--LLQSIE 241
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,658
Number of Sequences: 5004
Number of extensions: 75583
Number of successful extensions: 288
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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